Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Heteromita sp. PRA-74 strain:ATCC-PRA-74

ABSTRACT: Heteromita sp. PRA-74 strain:ATCC-PRA-74 Raw sequence reads

PROVIDER: PRJNA1136918 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR30255745.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Chilodonella uncinata strain:ATCC PRA-257

Project description:Chilodonella uncinata strain:ATCC PRA-257 Raw sequence reads

| PRJNA413041 | ENA

Rhizamoeba sp. PRA-133

Project description:Rhizamoeba sp. PRA-133 Raw sequence reads

| PRJNA1136919 | ENA

Analysis of Curdlan Production in Agrobacterium sp. ATCC 31749

Project description:Gene Expression Analysis of Curdlan Production in Agrobacterium sp. ATCC 31749

2012-01-15 | GSE32576 | GEO

Organic Nitrogen Source is Critical for Welan Production in Sphingomonas sp. ATCC 31555

Project description:Welan gum is mainly produced by Sphingomonas sp. ATCC 31555 and has broad applications in industry such as that in cement production. Both carbon and nitrogen sources are essential for welan production. However, how nitrogen sources affect the metabolism and gene transcription of welan remains elusive. Here, we used next-generation sequencing RNA-seq to analyze the transcriptome of Sphingomonas sp. ATCC 31555 in the presence of inorganic or organic nitrogen sources. Enriched gene expression and pathway analysis suggest that organic nitrogen sources significantly enhanced the expression of genes in central metabolic pathways of Sphingomonas sp. ATCC 31555 and those critical for welan synthesis compared to that observed using inorganic nitrogen sources. The present study improves our understanding of the molecular mechanism underlying the use of nitrogen in welan synthesis in Sphingomonas sp., as well as provides an important transcriptome resource for Sphingomonas sp. in relation to nitrogen sources.

2016-03-25 | GSE79497 | GEO

Salpingoeca rosetta strain:ATCC PRA-366

Project description:Salpingoeca rosetta strain:ATCC PRA-366 Genome sequencing

| PRJNA222515 | ENA

Babesia microti strain:ATCC PRA-99

Project description:Babesia microti strain:ATCC PRA-99 Genome sequencing

| PRJNA76783 | ENA

Murine mammary gland: PRA transgenics vs. wild-type

Project description:Progesterone receptor (PR) is expressed from a single gene as two isoforms, PRA and PRB. In normal breast human tissue, PRA and PRB are expressed in equimolar ratios, but isoform ratio is altered during malignant progression, usually leading to high PRA:PRB ratios. We took advantage of a transgenic mouse model where PRA isoform is predominant (PRA transgenics) and identified the key transcriptional events and associated pathways underlying the preneoplastic phenotype in mammary glands of PRA transgenics as compared with normal wild-type littermates.

2018-05-23 | GSE112742 | GEO

Streptomyces sp. ATCC 14903

Project description:Analysis of culture extracts from Streptomyces sp. ATCC 14903 and comparison to actinonin commercial standard

2017-08-16 | MSV000081445 | MassIVE

Transcriptome analysis of Agrobacterium sp. ATCC 31749 wild strain and ΔfnrN based on RNA-seq

Project description:Purpose:first,we want to find the genes revelant to curdlan synthesis and oxygen regulation, second, we want to research the function of fnrN gene in Agrobacterium sp. ATCC 31749. Method: samples of cell growth phase, curdlan-producing phase (normoxia) and curdlan-producing phase (micro-oxygen treated) in both Agrobacterium sp. ATCC 31749 wild strain and ΔfnrN strain were collectecd to extract mRNA. Each sample was treated in duplicate. The softwares we used include fastqc, trimmomatic, TopHat2 and Cufflinks. Illumina Hiseq4000 was used to complete the research.

2017-12-27 | GSE92937 | GEO

Streptomyces sp. 74 strain:74

Project description:Streptomyces sp. 74 strain:74 Genome sequencing

| PRJNA402578 | ENA