Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Dog plaque metagenomes

PROVIDER: PRJNA1141513 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR30067300.fastq.gz	Fastqsanger.gz
	SRR30067300_1.fastq.gz	Fastqsanger.gz
	SRR30067300_2.fastq.gz	Fastqsanger.gz
	SRR30067301.fastq.gz	Fastqsanger.gz
	SRR30067301_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 195

Similar Datasets

Project description:metagenomes of dog otitis

| PRJNA1045271 | ENA

Studies of canine breed development on the island of Sardinia recapitulate genomic features of human population isolates [COO]

Project description:The Italian island of Sardinia is well known in studies of human population isolates. It is also home to the Fonni's Dog, a breed of canine whose development was reliant on the functionality of the dog. Using genome-wide variant and sequence analyses, we have characterized the Fonni's Dog relative to 27 other dog breeds from the Mediterranean region. We determine introgression events relevant to Mediterranean breed development and describe how the Fonni's dog presents an intriguing model demonstrating the characteristics of traditional human population isolates and, in particular, exhibiting the unique demographic composition of the people of Sardinia.

2016-06-10 | GSE83151 | GEO

Studies of canine breed development on the island of Sardinia recapitulate genomic features of human population isolates [CANE]

2016-06-10 | GSE83225 | GEO

Studies of canine breed development on the island of Sardinia recapitulate genomic features of human population isolates [MEDI]

2016-06-10 | GSE83154 | GEO

Genome-wide array comparative genomic hybridization (aCGH) profiling of copy number variations (CNVs) in various dog breeds in comparison to a reference sample

Project description:This study used the NimbleGen dog whole genome CGH 2.1M tiling array to assay copy number variants in the dog genome in multiple breeds and wolf.

2012-08-21 | GSE40210 | GEO

Studies of modern Italian dog populations reveal multiple patterns for domestic breed evolution

Project description:Through thousands of years of breeding and strong human selection, the dog (Canis lupus familiaris) exists today within hundreds of closed populations throughout the world, each with defined phenotypes. A singular geographic region with broad diversity in dog breeds presents an interesting opportunity to observe potential mechanisms of breed formation. Italy claims 14 internationally recognized dog breeds, with numerous additional local varieties. To determine the relationship among Italian dog populations, we integrated genetic data from 263 dogs representing 23 closed dog populations from Italy, seven Apennine gray wolves. Using 142,840 genome-wide SNPs, this dataset was used in the identification of breed development routes for the Italian breeds that included divergence from common populations for a specific purpose, admixture of regional stock with that from other regions, and isolated selection of local stock with specific attributes.

2018-10-10 | GSE121027 | GEO

Composition and organization of active centromere sequences in complex genomes

Project description:We report the sequences bound to CENP-A in the dog genome (Canis familiaris) for high-throughput characterization of centromeric sequences. We compare these ChIPSeq reads (72 bp, single read) against a reference centromeric satellite DNA domain database for the dog genome, resulting in the annotation of sequence variation and estimated abundance of seven satellite families together with adjacent, non-satellite sequences. To study global patterns of sequence diversity and characterizing the subset of sequences correlated with centromere function, these sequences were evaluated relative to a comprehensive centromere sequence domain k-mer library. From this analysis, we identify functional sequence features from two satellite families (CarSat1 and CarSat2) that are defined by distinct arrays subtypes. Sequences bound to CENP-A in MDCK (dog) cell line

2012-07-23 | E-GEOD-38079 | biostudies-arrayexpress

canine metagenome

Project description:Profiling of bacterial communities associated with periodontal disease severity in dog subgingival plaque

| PRJDB16657 | ENA

Whole genome sequence, SNP chips and pedigree structure

Project description:Building demographic profiles in domestic dog breeds to optimize genetic trait mapping study design

2016-11-24 | GSE90441 | GEO