Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sus scrofa

ABSTRACT: Sus scrofa transcriptome sequencing data

PROVIDER: PRJNA1148337 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR30818140_1.fastq.gz	Fastqsanger.gz
	SRR30818140_2.fastq.gz	Fastqsanger.gz
	SRR30818141_1.fastq.gz	Fastqsanger.gz
	SRR30818141_2.fastq.gz	Fastqsanger.gz
	SRR30818142_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 60

Similar Datasets

Sus scrofa

Project description:Sus scrofa Transcriptome sequencing

| PRJNA223356 | ENA

Sus scrofa scrofa

Project description:Sus scrofa Transcriptome

| PRJNA889199 | ENA

Sus scrofa

Project description:Sus scrofa Transcriptome

| PRJNA759048 | ENA

Sus scrofa

Project description:Sus scrofa Transcriptome

| PRJNA1049596 | ENA

Total RNA sequencing in multiple Sus Scrofa tissues reveals novel long non-coding RNAs functioning in skeletal muscle development

Project description:Long non-coding RNAs (lncRNAs) play important roles in diverse biological processes. However, the landscape of lncRNAs is largely unclear in Sus scrofa. Here we performed stranded RNA-seq on total RNA libraries from over 100 samples of Sus scrofa tissues. We identified 10,813 lncRNAs in Sus scrofa, of which 9,075 are novel. 57% of these lncRNAs were conserved in both human and mouse. These conserved lncRNAs tend to be more tissue-specific than pig-specific lncRNAs, and enriched in reproducible organs (i.e. testis and ovary). We characterized a group of lncRNAs potentially involved in the skeletal muscle development. One such lncRNA, a homolog of maternally expressed gene 3 (MEG3), was specifically expressed in the skeletal muscle at early developmental stage. And its expression pattern is conserved in pig and mouse. By over-expressing and knocking down MEG3 in mouse myoblast cell lines, we demonstrated its novel function as a myoblast proliferation suppressor.

2017-02-09 | GSE73763 | GEO

Sus scrofa scrofa

Project description:Sus scrofa scrofa Genome sequencing

| PRJNA176478 | ENA

Sus scrofa breed:Sus scrofa domesticus

Project description:Sus scrofa breed:Sus scrofa domesticus Genome sequencing

| PRJNA665974 | ENA

Sus scrofa scrofa

Project description:Sus scrofa scrofa Transcriptome or Gene expression

| PRJNA476191 | ENA

Sus scrofa scrofa

Project description:Sus scrofa scrofa Transcriptome or Gene expression