Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Brassica napus

ABSTRACT: transcriptome-wide sequencing data of Brassica napus population

PROVIDER: PRJNA1149544 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR30541800_1.fastq.gz	Fastqsanger.gz
	SRR30541800_2.fastq.gz	Fastqsanger.gz
	SRR30541900_1.fastq.gz	Fastqsanger.gz
	SRR30541900_2.fastq.gz	Fastqsanger.gz
	SRR30542000_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 638

Similar Datasets

Brassica napus

Project description:Genome-wide sequencing data of Brassica napus population

| PRJNA1156901 | ENA

RNAseq of Brassica napus seed

Project description:mRNA expression profiling of the embryo, endosperm (micropylar, peripheral, chalazal), and seed coat (outer, inner, chalazal, chalazal proliferating tissue) of the developing Brassica napus seed. Tissues were isolated using laser microdissection (LMD) from Brassica napus seeds at the globular, heart, and mature green stages of seed development.

2024-07-15 | GSE271809 | GEO

leaf metagenome cultivar:Brassica napus

Project description:transcriptome-wide sequencing data of Brassica napus population

| PRJNA1157560 | ENA

Brassica napus control vs. heat stress

Project description:High temperature stress results in yield loss and alterations to seed composition during seed filling in oilseed rape (Brassica napus). However, the mechanism underlying this heat response is poorly understood. In this study, we employed a microarray analysis with silique walls and seeds from the developing siliques (20 days after flowering) of Brassica napus that had undergone heat stress.

2015-01-05 | GSE57697 | GEO

RNA-seq of Brassica napus seeds at different developmental stages

Project description:Understanding the regulation of lipid metabolism is vital for genetic engineering of Brassica napus (B. napus) to increase oil yield or modify oil composition. We report the application of Illumina Hiseq 2000 for transcriptome profiling of seeds of B. napus at different developmental stages, which may uncover the dynamic changes in lipid metabolism and reveal key genes involved in lipid biosynthesis and degradation. Total RNA from developing seeds at 2, 4, 6, and 8 weeks after pollination (WAP) were isolated and sequenced separately. The gene expression levels of all samples were quantified and normalized by the DESeq normalization. We found that the biosynthesis of fatty acids is a dominant cellular process from 2 to 6 WAP, while the degradation mainly happens after 6 WAP. Two genes, encoding for acetyl-CoA carboxylase and acyl-ACP desaturase, might be critical for fatty acid biosynthesis in oil rape seeds. This study provides insight into the mechanism underlying lipid metabolism and reveals candidate genes that are worthy of further investigation for their values in genetic engineering of B. napus. Whole Transcriptome profiling of developing Brassica napus seeds at 2, 4, 6, 8 WAP by RNA sequencing using Illumina HiSeq 2000.

2016-02-06 | E-GEOD-77637 | biostudies-arrayexpress

Brassica napus control vs. heat stress

2015-01-05 | E-GEOD-57697 | biostudies-arrayexpress

Gene expression regulated by Transparent Testa16 in Brassica napus

Project description:To broadly identify genes regulated by Transparent Testa16 in Brassica napus

2014-12-13 | GSE37449 | GEO

Gene expression profiles during seed development and maturation in Brassica napus

Project description:Time course of gene expression profiles during seed development and maturation in Brassica napus were studied using Combimatrix Brassica microarray.

2013-03-01 | GSE43918 | GEO

The proteasome inhibitor MG132 adjusts the transcriptome in Brassica napus roots

Project description:The goal of this study was to determine how proteasome inhibition alters the transcriptome in Brassica napus roots. Specifically, we wished to see if proteasome inhibition resulted in transcriptome signatures of oxidative stress, protein catabolism, or nitrogen assimilation

2021-12-03 | GSE127923 | GEO