Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Symbiodiniaceae of Montipora digitata

PROVIDER: PRJNA1164406 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR30780737.fastq.gz	Fastqsanger.gz
	SRR30780738.fastq.gz	Fastqsanger.gz
	SRR30780739.fastq.gz	Fastqsanger.gz
	SRR30780740.fastq.gz	Fastqsanger.gz
	SRR30780741.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 25

Similar Datasets

Montipora digitata

Project description:Montipora digitata overview

| PRJNA436615 | ENA

Unraveling the Differential Tolerance Mechanisms of Acropora formosa and Montipora digitata to Benzo[a]pyrene (BaP) Exposure via 4D Proteomics

Project description:Proteomic changes of Acropora formosa and Montipora digitata exposed to 50μg/L BaP for 72h and 120h.

2025-01-13 | PXD059708 |

Montipora digitata

Project description:Montipora digitata Transcriptome or Gene expression

| PRJNA422015 | ENA

Montipora digitata host 2016

Project description:Montipora digitata host 2016 Raw sequence reads

| PRJNA436198 | ENA

Project description:restriction site-associated DNA sequencing of Montipora digitata

| PRJNA895921 | ENA

Montipora digitata

Project description:Metabarcoding analysis of bacteria in of black band disease of encrusted Montipora digitata

| PRJDB10579 | ENA

Chromera velia de novo transcriptome assembly, annotation and comparative transcriptomics

Project description:Reef-building corals live in a mutualistic relationship with photosynthetic algae (family Symbiodiniaceae) that usually provide the bulk of the energy required by the coral host. This relationship is very sensitive to temperature stress, with as little as 1°C increase above mean in sea surface temperatures (SSTs) often leading to the collapse of the association. The meta-stability of these associations has led to interest in the potential of more stress tolerant algae to supplement or substitute for the normal Symbiodiniaceae mutualists. In this respect, the apicomplexan-like microalga Chromera is of particular interest as it is considerably more temperature tolerant than are most members of the Symbiodiniaceae. Here we generated a de novo transcriptome for a Chromera strain isolated from a GBR coral (“GBR Chromera”) and compared to those of the reference strain of Chromera (“Sydney Chromera”), and to those of Symbiodiniaceae algae (Fugacium, Cladocopium and Breviolum), as well as the apicomplexan parasite, Plasmodium falciparum. By contrast with the Symbiodiniaceae, the two Chromera strains had a high level of sequence similarity evident by very low levels of divergence in orthologous genes. Although surveys of specific KEGG categories provided few general criteria by which true coral mutualists might be identified, they provide a molecular rationalization for the near ubiquitous association of Cladocopium strains with Indo-Pacific reef corals in general and with Acropora spp. in particular. In addition, HSP20 genes may underlie the higher thermal tolerance shown by Chromera compared to Symbiodiniaceae

2019-11-02 | GSE139820 | GEO

Project description:Molecular and mineral responses of the scleractinian Montipora digitata grown in artificial Cretaceous seawater

| PRJEB36989 | ENA

Adansonia digitata

Project description:Adansonia digitata

| PRJNA931352 | ENA

Genome sequence and annotation of the fungus Periconia digitata

Project description:The Periconia genus belongs to the phylum Ascomycota, order Pleosporales, family Periconiaceae. Periconia is widespread in many habitats but little is known about its ecology. Several species produce bioactive molecules, among them, Periconia digitata extracts were shown to be deadly active against the pine wilt nematode. The strain CNCM I-4278, here identified as P. digitata was able to inhibit the plant pathogen Phytophthora parasitica. Since P. digitata has great potential as biocontrol agent and the only other genome available in the Periconiaceae family is that of Periconia macrospinosa, which is quite fragmentary, we generated long-read genomic data for P. digitata. Thanks to the PacBio Hifi sequencing technology, we obtained a high-quality genome with a total length of 38,967,494 bp, represented by 13 haploid chromosomes. The transcriptomic and proteomic data strengthen and support the genome annotation. Besides representing a new reference genome within the Periconiaceae, this work will also contribute in our understanding of the Eukaryotic tree of life. Not least, opens new possibilities to the biotechnological use of the species.

2023-08-04 | PXD038112 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data