Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Phyllosphere fungi amplicon sequencing

ABSTRACT: Phyllosphere fungi amplicon sequencing Raw sequence reads

PROVIDER: PRJNA1176126 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31074000_1.fastq.gz	Fastqsanger.gz
	SRR31074000_2.fastq.gz	Fastqsanger.gz
	SRR31074100_1.fastq.gz	Fastqsanger.gz
	SRR31074100_2.fastq.gz	Fastqsanger.gz
	SRR31074001_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 426

Similar Datasets

Phyllosphere fungi

Project description:Phyllosphere fungi Raw sequence reads

| PRJNA875603 | ENA

Phyllosphere protist amplicon sequencing

Project description:Phyllosphere protist amplicon sequencing Raw sequence reads

| PRJNA1176143 | ENA

Phyllosphere bacterial amplicon sequencing

Project description:Phyllosphere bacterial amplicon sequencing Raw sequence reads 16S rRNA

| PRJNA1159486 | ENA

Fungi in the phyllosphere

Project description:Fungi in the phyllosphere Raw sequence reads

| PRJNA1002870 | ENA

Phyllosphere bacterial amplicon sequencing Raw sequence reads 16S rRNA

Project description:Phyllosphere bacterial amplicon sequencing Raw sequence reads 16S rRNA Raw sequence reads

| PRJNA1175244 | ENA

Phyllosphere fungi in cold season

Project description:Phyllosphere fungi in cold season Raw sequence reads

| PRJNA876041 | ENA

Fungi in the phyllosphere of single specimen

Project description:Fungi in the phyllosphere of single specimen Raw sequence reads

| PRJNA1004196 | ENA

Transcriptome analysis of Arthrobacter in the phyllosphere

Project description:Arthrobacter chlorophenolicus A6 is a 4-chlorophenol degrading soil bacterium with high phyllosphere colonization capacity. Till now the genetic basis for the phyllosphere competency of Arthrobacter or other pollutant-degrading bacteria is uncertain. We investigated global gene expression profile of A. chlorophenolicus grown in the phyllosphere of common bean (Phaseolus vulgaris) compared to growth on agar surfaces.

2013-06-21 | GSE48198 | GEO

High-throughput 16S rRNA amplicon pyrosequencing of contaminated aquifer sediment

Project description:Contaminated aquifer (Dusseldorf-Flinger, Germany) templates extracted from 5 sediment depths ranging between 6.4 and 8.4 m below ground and over 3 years of sampling were amplified for amplicon pyrosequencing using the primers Ba27f (5’-aga gtt tga tcm tgg ctc ag-3’) and Ba519r (5’- tat tac cgc ggc kgc tg-3’), extended as amplicon fusion primers with respective primer A or B adapters, key sequence and multiplex identifiers (MID) as recommended by 454/Roche. Amplicons were purified and pooled as specified by the manufacturer. Emulsion PCR (emPCR), purification of DNA-enriched beads and sequencing run were performed following protocols and using a 2nd generation pyrosequencer (454 GS FLX Titanium, Roche) as recommended by the developer. Quality filtering of the pyrosequencing reads was performed using the automatic amplicon pipeline of the GS Run Processor (Roche), with a slight modification concerning the valley filter (vfScanAllFlows false instead of TiOnly) to extract the sequences. Demultiplexed raw reads were furhter trimmed for quality and lenght (>250 bp).

2012-11-11 | GSE25345 | GEO

MAGE-seq E. coli primary sigma factor RpoD amplicon high-throughput genotyping

Project description:Genotyping of RpoD mutants via amplicon sequencing from the following manuscript: \\"Systematic dissection of σ70 sequence diversity and function in bacteria\\" by Park and Wang (2020). Includes raw sequencing reads from samples from MAGE-seq single codon saturation mutagenesis and high-throughput fitness competition experiment as well as the RpoD ortholog mutants generated through recombineering and CRISPR selection.

2022-06-06 | E-MTAB-9103 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data