Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

TREM2 expression delineates spatially restricted and ontogenically distinct hepatic macrophages populations required for tissue repair. [10 Visium Spatial Seq]

ABSTRACT: TREM2 expression delineates spatially restricted and ontogenically distinct hepatic macrophages populations required for tissue repair. [10 Visium Spatial Seq]

PROVIDER: PRJNA1179316 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

TREM2 expression delineates spatially restricted and ontogenically distinct hepatic macrophages populations required for tissue repair. [10 Visium Spatial Seq]

Project description:Analysis of single cell RNA-seq, CITE-seq data and bulk RNA-seq data on cells isolated from the livers of mice following PBS and APAP (paracetamol/acetaminophen) administration. Spatial Transcriptomics analysis was performed using 10x Visium platform on mouse livers 48hrs post PBS or APAP administration. We also analysed single cell RNA-seq data on CD64+F4/80+ macrophages isolated from the livers of Trem2 fl/fl mice and CD64CRE Trem2 fl/fl mice.

2024-10-30 | GSE280515 | GEO

TREM2 expression delineates spatially restricted and ontogenically distinct hepatic macrophages populations required for tissue repair. [bulkRNA-seq]

Project description:TREM2 expression delineates spatially restricted and ontogenically distinct hepatic macrophages populations required for tissue repair. [bulkRNA-seq]

| PRJNA1179315 | ENA

TREM2 expression delineates spatially restricted and ontogenically distinct hepatic macrophages populations required for tissue repair. [scRNA-Seq]

Project description:TREM2 expression delineates spatially restricted and ontogenically distinct hepatic macrophages populations required for tissue repair. [scRNA-Seq]

| PRJNA1179888 | ENA

TREM2 expression delineates spatially restricted and ontogenically distinct hepatic macrophages populations required for tissue repair. [bulkRNA-seq]

2024-10-30 | GSE280514 | GEO

TREM2 expression delineates spatially restricted and ontogenically distinct hepatic macrophages populations required for tissue repair. [scRNA-Seq]

2024-10-30 | GSE280652 | GEO

Spatially resolved multiomics of human cardiac niches - Visium

Project description:Spatially resolved multiomics of human cardiac niches - Visium

| PRJEB62497 | ENA

Spatially resolved transcriptomic profiling: an experimental comparison of GeoMx Digital Spatial Profiling and Visium CytAssist spatial transcriptomics in three cancer types (Chromium and Visium)

Project description:We performed Visium CytAssist (10X), GeoMx DSP (Nanostring) and Chromium Flex (10X Genomics) full transcriptome profiling on Breast Cancer (BC), Lung Cancer (LC) and diffuse large B cell lymphoma (DLBCL) samples from archival FFPE blocks. We explore the data quality across blocks with different storage times and DV200 values for all the three methods. We compared the cell type signature purity between ST methods Visium and GeoMx by utilising pathology annotations and scRNAseq. For the Visium and Chromium methods with a large number of data points we explored the heterogeneity between tissues. Finally, we demonstrate the discovery of patient-specific tumor-TME interactions across all three methods.

2024-11-01 | E-MTAB-14560 | biostudies-arrayexpress

Identification of spatially-resolved markers of malignant transformation in Intraductal Papillary Mucinous Neoplasms. [Visium]

Project description:Spatial transcriptomics characterization of IPMN samples by Visium Gene Expression FFPE

2024-02-15 | GSE229877 | GEO

Spatially resolved transcriptomic profiling: an experimental comparison of GeoMx Digital Spatial Profiling and Visium CytAssist spatial transcriptomics in three cancer types (GeoMx)

2024-11-01 | E-MTAB-14566 | biostudies-arrayexpress

A spatially resolved single cell genomic atlas of the adult human breast [visium]

Project description:A spatially resolved single cell genomic atlas of the adult human breast [visium]

| PRJNA983280 | ENA