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Glehnia littoralis

ABSTRACT: Glehnia littoralis Raw sequence reads

PROVIDER: PRJNA1182954 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR31279438_1.fastq.gz	Fastqsanger.gz
	SRR31279438_2.fastq.gz	Fastqsanger.gz
	SRR31279439_1.fastq.gz	Fastqsanger.gz
	SRR31279439_2.fastq.gz	Fastqsanger.gz
	SRR31279440_1.fastq.gz	Fastqsanger.gz

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Identification of miRNAs from Glehnia littoralis by high-throughput sequencing and their response to salt stress

Project description:Glehnia littoralis is a perennial herb growing on the sandy beaches. In this study, high-throughput sequencing of small RNA was performed to identify miRNAs and their response to salt stress in G. littoralis. As a result, 37 conserved miRNAs belonging to 13 families and 37 novel miRNAs were identified. Among the 74 miRNAs, the expression levels of miR-156b*, miR-171, miR-171*, and miR-319 were downregulated and that of miR-399a, miR-399a*, miR-399b, miR-399b*, novel-9 and novel-14* were upregulated under salt stress. Target prediction of salt-responsive miRNAs indicated that these miRNAs exerted a role by regulating specific stress-responsive genes, such as SPLs. However, a lot of target genes of salt-responsive miRNAs were uncharacterized, which implied that there might be some new miRNA-mediated reguatory of salt response in G. littoralis.

2016-07-21 | GSE84621 | GEO