Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The seed and seedling microbiome of choysym

ABSTRACT: The seed and seedling microbiome of choysym Raw sequence reads

PROVIDER: PRJNA1184200 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Time-series of the seed-to-seedling transition in Arabidopsis thaliana

Project description:The expression levels of Arabidopsis thaliana (Col-0) genes in several developmental stages during the seed-to-seedling transition were measured by using high-density Affymetrix® arrays (Aragene.st1.1). We used a time-series of microarrays to gain temporal resolution and identify relevant genes in the seed-to-seedling transition.

2015-12-18 | GSE65394 | GEO

AtSDR4L and DIG1 interact with VAL2 to promote seed-to-seedling transition

Project description:During the embryonic-to-vegetative transition in plants, many genes that were active in seeds become transcriptionally turned off. Recently, we reported a new transcriptional corepressor of the embryonic program, SEED DORMANCY 4-LIKE (AtSDR4L). Multiple lines of evidence suggest that AtSDR4L plays an essential role in regulating the transition from seed to seedling, possibly by collaborating with components of Polycomb Repressive Complexes (PRCs) and PRC-associated proteins VIVIPAROUS1/ABI3-LIKE (VAL) proteins. Through yeast-two-hybrid (Y2H) assays and genome-wide binding analysis, we demonstrated that AtSDR4L and DIG1 physically interact with VAL2 but not with VAL1. The interactions depend on the C-terminal halves of AtSDR4L and DIG1, and the N-terminal half of VAL2. AtSDR4L binds to target loci in germinating seeds, preceding reduced accumulation of H3K27me3 Atsdr4l seedlings at a few loci important for seed development. These findings suggest AtSDR4L, and potentially DIG1, facilitate the recruitment of PRC2 through VAL2 to inactivate seed development genes, thus promoting the seed-to-seedling transition.

2024-04-23 | GSE246997 | GEO

seed metagenome

Project description:Oilseed rape seed microbiome raw sequence reads

| PRJNA358488 | ENA

citrus seed microbiome

Project description:citrus seed microbiome

| PRJEB61439 | ENA

seed fungal microbiome

Project description:Seed fungal microbiome

| PRJNA848675 | ENA

Seed and seedling associated bacteria

Project description:Bacteria isolated from common bean seed and seedling to reconstruct bacterial synthetic community inoculation on seed. Genome sequencing and assembly

| PRJNA1041598 | ENA

Daucus seed microbiome

Project description:Endophytic bacterial microbiota of seed from wild carrot (Daucus carota)-Raw sequence reads

| PRJNA928079 | ENA

seed metagenome

Project description:seed metagenome Raw sequence reads

| PRJNA826995 | ENA

seed metagenome

Project description:seed metagenome Raw sequence reads

| PRJNA637975 | ENA

seed metagenome

Project description:seed metagenome Raw sequence reads