Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Cyprinus carpio 'koi' strain:black

ABSTRACT: Cyprinus carpio strain:koi var black Genome sequencing

PROVIDER: PRJNA1191445 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR31714901_1.fastq.gz	Fastqsanger.gz
	SRR31714901_2.fastq.gz	Fastqsanger.gz
	SRR31714902_1.fastq.gz	Fastqsanger.gz
	SRR31714902_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Cyprinus carpio 'koi' Raw sequence reads

Project description:Genome-wide analysis of skin color-related lncRNA and mRNA expression in Koi carp, Cyprinus carpio L. LncRNAs information linked to fish skin color regulation is over-limited. In this study, Illumina sequencing and bioinformatics were primarily conducted on black, white and red skin colors of Koi carp. A total of 590,415,050 clean reads, 446,614 putative transcripts, 4,252 known and 72,907 novel lncRNAs were simultaneously obtained, respectively. Out of these genes, 92 significant differentially expressed lncRNAs and 722 mRNAs were excavated. Ccr_lnc5622441, Ccr_lnc765201 were found up-regulated in black and red skins; Ccr_lnc14074601 were up-regulated in white skin; and premelanosome proteins a (Pmela), tyrosinase (Tyr) were up-regulated in black skin, etc. Quantitative real-time PCR (qRT-PCR) further validated 12 differentially expressed genes were consistent with RNA-seq. Moreover, 70 lncRNAs on 107 target mRNAs in cis and 79 lncRNAs on 41,625 target mRNAs in trans were investigated, the networks revealed one lncRNAs can connected with numerous mRNAs, vice versa. These findings broadened the lncRNAs landscape of skin colors and provided new insights into the mechanisms underlying lncRNAs mediated pigmentation and differentiation in Koi carp.

2019-01-15 | GSE125039 | GEO

Cyprinus carpio 'koi'

Project description:Cyprinus carpio strain:koi golden Genome sequencing

| PRJNA1191556 | ENA

Cyprinus carpio 'koi'

Project description:Cyprinus carpio 'koi' Raw sequence reads

| PRJNA479938 | ENA

Cyprinus carpio 'koi'

Project description:Cyprinus carpio 'koi' Raw sequence reads

| PRJNA508277 | ENA

Cyprinus carpio strain:koi

Project description:Cyprinus carpio skin and scale transcriptome sequencing reads