Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Cafeteria burkhardae

ABSTRACT: Cafeteria burkhardae Transcriptome or Gene expression

PROVIDER: PRJNA1192676 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31641317_1.fastq.gz	Fastqsanger.gz
	SRR31641317_2.fastq.gz	Fastqsanger.gz
	SRR31641318_1.fastq.gz	Fastqsanger.gz
	SRR31641318_2.fastq.gz	Fastqsanger.gz
	SRR31641319_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Cafeteria transcriptome

Project description:Cafeteria burkhardae transcriptome

| PRJEB54677 | ENA

Gene expression based analysis of CroV infection of Cafeteria roenbergensis

2010-07-18 | GSE19051 | GEO

Cafeteria roenbergensis

Project description:Cafeteria roenbergensis overview

| PRJNA387497 | ENA

Cafeteria roenbergensis strain:NIES-1012

Project description:Transcriptome of Cafeteria roenbergensis

| PRJDB4368 | ENA

Gene expression based analysis of CroV infection of Cafeteria roenbergensis

Project description:In this study, total RNA was extracted from cultures of Cafeteria infected with the Cafeteria roenbergensis virus BV-PW1 (CroV) and hybridised to a CroV microarray in order to determine the temporal expression profile during infection. A straightforward measure of whether each spot was on or off was determined as the infection progressed starting at 0 h post infection (control), then 1, 2, 3, 6, 12, 24, 48 and 72 h pi. Oligonucleotides 50-70 bp in length were designed for 452 predicted CroV ORFs and printed onto amino silane treated glass slides.

2010-07-18 | E-GEOD-19051 | biostudies-arrayexpress

Cafeteria roenbergensis

Project description:Genomes of Cafeteria roenbergensis, strains E4-10P, BVI, Cflag and RCC970-E3

| PRJNA552725 | ENA

Gene expression based analysis of CroV infection of Cafeteria roenbergensis

Project description:Gene expression based analysis of CroV infection of Cafeteria roenbergensis

| PRJNA120549 | ENA

Cafeteria roenbergensis isolate:ATCC 50561

Project description:Cafeteria roenbergensis isolate:ATCC 50561 Raw sequence reads

| PRJNA387393 | ENA

Virion proteome of Cafeteria roenbergensis virus strain BV-PW1

Project description:This project describes the protein composition of the Cafeteria roenbergensis virus (CroV, strain BV-PW1: TaxID 693272) particle, a giant marine DNA virus that infects the heterotrophic nanoflagellate microeukaryote C. roenbergensis. CroV is a member of the Nucleo-Cytoplasmic Large DNA Virus clade and related to Acanthamoeba polyphaga mimivirus. CroV possesses a DNA genome of ~730 kilobase pairs that encodes 544 predicted proteins. We analyzed the protein composition of purified CroV particles by liquid chromatography - tandem mass spectrometry (LC-MS/MS) and identified 141 virion-associated CroV proteins. Predicted functions could be assigned to 37% of these proteins, which include structural proteins as well as enzymes for transcription, DNA repair, redox reactions and protein modification. Homologs of 36 CroV virion proteins have previously been found in the virion of Acanthamoeba polyphaga mimivirus. This study shows that giant DNA virus particles contain more than one hundred viral proteins that include specific enzymatic functions.

2014-05-22 | PXD000993 | Pride

eukaryotic plankton metagenome

Project description:Metatranscriptome of uninfected Nanoflagellate Cafeteria burkhardae from Gulf of Mexico, United States - RCC_12_R2

| PRJNA617961 | ENA