Project description:The baya weaver (Ploceus philippinus: Ploceidae), found across South and Southeast Asia, is known for its oblique-shaped overhanging nests. During the breeding season, females select from partially built ('helmet'-stage) nests constructed by the males, after which nests are completed and used by the birds. Reproductive success is linked to an optimal microclimate within these nest structures. We recorded nest tree and nest structure characteristics of 66 fully completed nests for 22 colonies located in two climatically dissimilar sites in Peninsular Malaysia and examined how these factors affected the microclimate within six nests that were randomly selected at each location. Total vertical length of the nests, the height of nests from the ground, and the diameter at breast height of the nest trees recorded for the Selangor and Perlis colonies (in the southwest and north, respectively), were significantly different. The climatic variables inside and outside the nests correlated significantly in both sites. Our findings indicate that nest structures differed in Selangor and Perlis and were linked to nest microclimate, possibly being influenced by the surrounding temperature.
Project description:The DNA isolated from 44 either frozen or FFPE Neuroendocrine Neoplasm (NEN) was analysed by NGS, to identify genes more likely to be subject to sequence variations among 523 cancer-related ones.
Project description:Plasma DNA from 558 malignancies, 263 benign and borderline tumors and 367 healthy control samples were collected and subjected to random short-gun whole genome sequencing.
Project description:This study aims to investigate the DNA methylation patterns at transcription factor binding regions and their evolutionary conservation with respect to binding activity divergence. We combined newly generated bisulfite-sequencing experiments in livers of five mammals (human, macaque, mouse, rat and dog) and matched publicly available ChIP-sequencing data for five transcription factors (CEBPA, HNF4a, CTCF, ONECUT1 and FOXA1). To study the chromatin contexts of TF binding subjected to distinct evolutionary pressures, we integrated publicly available active promoter, active enhancer and primed enhancer calls determined by profiling genome wide patterns of H3K27ac, H3K4me3 and H3K4me1.
