Project description:Genomic resources for amphibians are still hugely under-represented in vertebrate genomic research, despite being a group of major interest for ecology, evolution and conservation. Amphibians constitute a highly threatened group of vertebrates, present a vast diversity in reproductive modes, are extremely diverse in morphology, occupy most ecoregions of the world, and present the widest range in genome sizes of any major group of vertebrates. We combined Illumina, Nanopore and Hi-C sequencing technologies to assemble a chromosome-level genome sequence for an anuran with a moderate genome size (assembly span 3.09 Gb); Pelobates cultripes, the western spadefoot toad. The genome has an N50 length of 330 Mb with 98.6% of the total sequence length assembled into 14 super scaffolds, and 87.7% complete BUSCO genes. We use published transcriptomic data to provide annotations, identifying 32,684 protein-coding genes. We also reconstruct the P. cultripes phylome and identify 2,527 gene expansions. We contribute the first draft of the genome of the western spadefoot toad, P. cultripes. This species represents a relatively basal lineage in the anuran tree with an interesting ecology and a high degree of developmental plasticity, and thus is an important resource for amphibian genomic research.
Project description:Studies on the impacts of variation of biotic interactions at key life cycle stages are crucial to understand the interface between ecological and developmental processes. Predators exert a major impact on prey fitness. Although direct consumption entails the greatest effect, predators can affect prey by means of other mechanisms. For instance, injuries inflicted by failed predation attempts can jeopardize prey fitness, even beyond the short-term. In anuran tadpoles, failed predation typically results in partial tail loss, which is known to reduce swimming speed. However, the potential consequences of tadpole partial tail loss after metamorphosis remain understudied. Because tail materials could be important in conforming metamorph body, we assess the effects of tadpole partial tail loss on metamorph body size in Iberian spadefoot toads Pelobates cultripes. We clipped 55% tail length of pre-tail-resorption stage anesthetized tadpoles, and compared their body size as metamorphs with anesthetized and non-anesthetized non-tail-clipped controls. Also, we tested whether tail length correlated with metamorph body size of individuals of the control groups. Tail-clipped tadpoles produced smaller metamorphs than both controls (the bdy size of metamorphs from both controls was similar), which could incur costs in mid-term survival or time to first reproduction. This effect could be particularly important in areas with introduced predators, if autochthonous tadpoles lack defenses against them. Results suggest that materials resorbed from tadpole tail tissues might be reallocated into metamorph body, according to the negative effect of shorter tails in a correlational analysis, and clipped tails in an experimental test, on metamorph body size.
Project description:On land, the amphibians interact with the environment in a complex way-even small changes in the physiological conditions may significantly impact the behaviour and vice versa. In ectothermic tetrapods, the transition from inactive to active phase may be related to important changes in their thermal status. We studied the thermal ecology of adult Balkan spadefoots (Pelobates balcanicus Karaman, 1928) in northeastern Bulgaria. These toads spend the daytime buried between 10 and 15 cm in sandy substrates, and emerge after sunset. On the substrate, their thermal energy exchange is defined by the absence of heat flow from the sun. Secondary heat sources, like stored heat and infrared radiation from the soil play an important role for the thermal balance of the active spadefoot toads. At the beginning of their daily activity, we measured substrate temperature (at a depth of 11-12 cm), toad's surface body temperature, and also provided thermal profiles of the animals and the substrate surface in their microhabitats. In animals which recently emerged from the substrate, the temperature was comparatively higher and was closer to that of the subsoil on the spot. After that, body temperature decreased rapidly and continued to change slowly, in correlation with air temperature. We detected a temperature gradient on the dorsal surface of the toads. On the basis of our measurements and additional data, we discuss the eventual role of air humidity and the effects of surface and skin water evaporation on the water balance and activity of the investigated toads.