Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Telomere-to-Telomere genome assembly of the halophytic grass Zoysia macrostachya

PROVIDER: PRJNA1206549 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR31894561_1.fastq.gz	Fastqsanger.gz
	SRR31894561_2.fastq.gz	Fastqsanger.gz
	SRR31894562_1.fastq.gz	Fastqsanger.gz
	SRR31894562_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Zoysia macrostachya

Project description:Zoysia macrostachya Genome

| PRJNA947660 | ENA

Zoysia macrostachya

Project description:Zoysia macrostachya overview

| PRJNA691411 | ENA

Project description:Zoysia macrostachya leaf transcriptome

| PRJNA600364 | ENA

Transcriptome expression in Paspalum vaginatum under salt stress

Project description:Lipid metabolism and antioxidant system contributed to salt salinity tolerance induced by Na+ accumulation in halophytic grass seashore paspalum

2023-05-23 | GSE233155 | GEO

Zoysia macrostachya

Project description:Zoysia macrostachya Raw sequence reads

| PRJNA599516 | ENA

Subtelomeric CTCF and Cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline

Project description:We investigated the reported binding of telomere associated factor TERF1 and TERF2 to internal telomere sites using ChIP-Seq for these two factors in a lymphoblastoid cell line. We mapped over 40 million reads for each sample to a custom reference genome that incorporates our subtelomere assembly, and generated signal tracks using only uniquely mapping reads, and also using a multimapping pipeline we developed. We find that peaks are misshapen and made up of reads that cannot be distinguished from true telomere sequence. Removing telomere identified reads removes all internal signal. Examination of TRF1 and TRF2

2014-02-18 | E-GEOD-55053 | biostudies-arrayexpress

Subtelomeric CTCF and Cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline

2014-02-18 | GSE55053 | GEO

The role of HELLS in human induced pluripotent stem cells II

Project description:interactions that require remodeling proteins like the Helicase, Lymphoid-specific (HELLS). Here, we generate HELLS and de novo DNA methyltransferase 3 A and B (DNMT3A/B) knockout hu-man pluripotent stem cells and assemble telomere-to-telomere maps of whole genome bisulfite sequencing data combined with ATAC-sequencing. Disrupting HELLS induces a global loss of DNA methylation that is distinct from the de novo DNMTs, in particular over peri/centromeric satellite repeats as defined in the telomere-to-telomere genome assembly. However, HELLS is dispensable for local enhancer remodeling and the potential to differentiate into the three germ layers. Taken together, these findings further clarify the genomic targets and role of HELLS in human cells.

2025-06-23 | GSE250465 | GEO

Porteresia coarctata halophytic grass rhizosphere soil microbiome

Project description:Porteresia coarctata halophytic grass rhizosphere soil microbiome Metagenome

| PRJNA809778 | ENA

Paspalum vaginatum halophytic grass rhizosphere soil microbiome

Project description:Paspalum vaginatum halophytic grass rhizosphere soil microbiome Metagenome

| PRJNA809772 | ENA