Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Aesculus hippocastanum

ABSTRACT: Aesculus hippocastanum overview

PROVIDER: PRJNA1217564 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR14242311_1.fastq.gz	Fastqsanger.gz
	ERR14242311_2.fastq.gz	Fastqsanger.gz
	ERR14231596.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Aesculus chinensis

Project description:Aesculus chinensis overview

| PRJNA624694 | ENA

Aesculus chinensis

Project description:Aesculus chinensis Raw sequence reads

| PRJNA496363 | ENA

Aesculus chinensis var. wilsonii

Project description:Aesculus chinensis var. wilsonii Raw sequence reads

| PRJNA609250 | ENA

Brenneria on Aesculus

Project description:Aesculus hippocastanum is a new host plant of Brenneria nigrifluens

| PRJEB34969 | ENA

Aesculus chinensis var. wilsonii

Project description:Aesculus chinensis var. wilsonii Genome sequencing and assembly

| PRJNA845011 | ENA

Project description:Aesculus turbinata Blume

| PRJNA1222841 | ENA

Aesculus chinensis

Project description:Horse chestnut tree genome project

| PRJNA1058543 | ENA

The Chromosome-level genome of <i>Aesculus wilsonii</i> provides new insights into terpenoid biosynthesis and <i>Aesculus</i> evolution.

Project description:Aesculus L. (buckeye and horse chestnut) are woody plant species with important horticultural and medicinal values. Aesculus seeds are widely used as biomedicine and cosmetic ingredients due to their saponins. We report a chromosomal-scale genome of Aesculus wilsonii. Sequences amounting to a total of 579.01 Mb were assembled into 20 chromosomes. More than half of the genome (54.46%) were annotated as repetitive sequences, and 46,914 protein-coding genes were predicted. In addition to the widespread gamma event with core eudicots, a unique whole-genome duplication (WGD) event (17.69 Mya) occurred in Aesculus after buckeye differentiated from longan. Due to WGD events and tandem duplications, the related synthetic genes of triterpene saponins unique to Aesculus increased significantly. Combined with transcriptome characterization, the study preliminarily resolved the biosynthetic pathway of triterpenoid saponins like aescin in A. wilsonii genome. Analyses of the resequencing of 104 buckeye accessions revealed clear relationship between the geographic distribution and genetic differentiation of buckeye trees in China. We found that the buckeye species found in southern Shaanxi is A. wilsonii rather than A. chinensis. Population dynamics analysis further suggests that the population size and evolution of existing buckeye species have been influenced by climate fluctuations during the Pleistocene and recent domestication events. The genome of A. wilsonii and population genomics of Aesculus provide a resource for future research on Hippocastanaceae. These findings will contribute to the utilization and diversity protection of Aesculus.

| S-EPMC9642078 | biostudies-literature

drAesHipp

Project description:Aesculus hippocastanum (common horse chestnut)

| PRJEB85396 | ENA

Comparative study of antioxidant status in androgenic embryos of Aesculus hippocastanum and Aesculus flava.

Project description:In vivo (leaves and seed embryos) and in vitro (androgenic embryos) antioxidant scavenging activity of Aesculus hippocastanum and Aesculus flava medical plants was examined. Here we report antioxidant enzyme activities of superoxide dismutase, catalase, guaiacol peroxidase and glutathione peroxidase, reduced glutathione quantity, flavonoids, soluble protein contents, quantities of malondialdehyde, and (•)OH radical presence in the investigated plant samples. Total antioxidant capacity of all the samples of A. hippocastanum and A. flava was determined using FRAP, DPPH, and NO(•) radical scavenger capacity. The leaves of A. flava collected from the botanical garden exhibited stronger antioxidant activity (higher activities of SOD, and higher quantities of GSH, TSH, TPC, and scavenging abilities of DPPH and NO(•), and higher FRAP values and lowest quantities of (•)OH and MDA) than in vitro obtained cultures. However, the leaves of A. flava showed higher antioxidant activity than the leaves of A. hippocastanum, and therefore they have a stronger tolerance of oxidative stress. Androgenic embryos of both species had low amount of antioxidants due to controlled in vitro environmental conditions (T, photoperiod, humidity, nutritive factors, and pathogen-free). Our results confirmed that we found optimal in vitro conditions for producing androgenic embryos of both Aesculus species. Also, we assume that horse chestnut androgenic embryos can be used as an alternative source for large-scale aescin production.

| S-EPMC3932234 | biostudies-other

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data