Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Zooplankton charaterisation through COI gene using eDNA

PROVIDER: PRJNA1217831 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR32208000_1.fastq.gz	Fastqsanger.gz
	SRR32208000_2.fastq.gz	Fastqsanger.gz
	SRR32208001_1.fastq.gz	Fastqsanger.gz
	SRR32208001_2.fastq.gz	Fastqsanger.gz
	SRR32208002_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 128

Similar Datasets

Project description:COI and 18S rRNA zooplankton NGS through eDNA and tissue samples

| PRJNA956157 | ENA

Project description:COI metabarcoding of river eDNA samples

| PRJNA1214582 | ENA

A coilin mutant provides a sensitized system for identifying modifiers of alternative splicing and posttranscriptional gene silencing in Arabidopsis thaliana

Project description:Coilin is a scaffold protein essential for the structural integrity of Cajal Bodies, which are non-membranous nuclear organelles that are thought to facilitate assembly and maturation of nuclear RNPs, including spliceosomal snRNPs. To investigate further coilin’s functions in plant cells, and to identify proteins that may functionally interact with coilin, we performed a genetic suppressor screen in Arabidopsis thaliana using a coilin (coi) mutant displaying altered splicing of a GFP pre-mRNA. The modified splicing pattern results in a ‘hyper-GFP’ phenotype in young coi seedlings relative to the intermediate level of GFP in wild-type seedlings. Additionally, in newly emerging leaves of older coi seedlings, the GFP gene frequently undergoes abrupt siRNA-associated posttranscriptional gene silencing that persists during growth. In the suppressor screen, we searched for mutations that subdue one or both of these GFP phenotypes and identified several understudied factors in plants: WRAP53, a putative Cajal body protein; SMU2, a predicted splicing-related factor; and ZC3HC1, an uncharacterized zinc finger protein. All three mutations return the hyper-GFP phenotype of the coi mutant to approximately the intermediate wild-type level. The zc3hc1 mutations in particular induce premature and more extensive posttranscriptional gene silencing similar to mutations in SOP1 and DCL4, which are known modifiers of posttranscriptional gene silencing. Candidate coilin-interacting proteins identified by immunoprecipitation-mass spectrometry include many splicing-related factors, nucleolar proteins, and mRNA export factors. Our results demonstrate the usefulness of the coi mutant to identify new modifiers of alternative splicing and posttranscriptional gene silencing, and suggest diverse roles for coilin in plant cells.

2023-07-27 | PXD027146 | Pride

Effect of methyl jasmonate treatment on rice leaves of wild-type and rice COI mutatns

Project description:Analysis of leaves of wild-type and rice COI mutants treated with methyl jasmonate (MeJA). Results provide the role of rice COI on response to jasmonic acid.

2022-06-11 | GSE205750 | GEO

Project description:Zooplankton Diversity in Qiandao Lake Based on eDNA

| PRJNA1174110 | ENA

Project description:eDNA metbarcoding of Gelatinous Zooplankton in Fram Strait

| PRJNA1044054 | ENA

Project description:Zooplankton species diversity evaluates using eDNA metabarcoding in Ulleung Basin, East/Japan Sea during 202107

| PRJNA1048645 | ENA

Project description:Metazoan diversity in the Atacama and Kermadec trenches through eDNA (metabarcoding of 18S and COI)

| PRJNA806167 | ENA

Project description:NW Iberian Freshwater Macroinvertebrate COI Metabarcoding II Water eDNA

| PRJNA1073854 | ENA

Distribution of the giant clam Tridacna elongatissima in the Western Indian Ocean