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Homo sapiens

ABSTRACT: Human embryonic stem cells HELP-tagging cytosine methylation data (Albert Einstein College of Medicine)

PROVIDER: PRJNA122627 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR039194.fastq.gz	Fastqsanger.gz
	SRR039195.fastq.gz	Fastqsanger.gz
	SRR039196.fastq.gz	Fastqsanger.gz
	SRR039197.fastq.gz	Fastqsanger.gz

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Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells

Project description:Genome-wide analysis of histone modification (H2AZ, H3K27ac, H3K27me3, H3K36me3, H3K4me1, H3K4me2, H3K4me3 and H3K9me3), protein-DNA binding (TAF1, P300, Pou5f1 and Nanog), cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells We generated histone modification data (H2AZ, H3K27ac, H3K27me3, H3K36me3, H3K4me1, H3K4me2, H3K4me3 and H3K9me3) and protein-DNA binding data (TAF1, P300, Pou5f1 and Nanog) using Chromatin Immunoprecipitation followed by short sequencing (ChIP-seq), cytosine methylation data using methylated DNA immunoprecipitation followed by sequencing (MeDIP-seq) and DNA digestion by methyl-sensitive restriction enzymes followed by sequencing (MRE-seq), transcriptome data with RNA short sequencing (RNA-seq) in human embryonic stem cells, mouse embryonic stem cells, pig induced pluripotent stem cells and mouse embryonic stem cells under activin-A-induced-differentiation. Examination of 8 histone modifications, 4 protein-DNA binding, cytosine methylation and transcriptome in human embryonic stem cells, mouse embryonic stem cells, pig induced pluripotent stem cells and mouse embryonic stem cells under activin-A-induced-differentiation.

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Mus musculus

Project description:Liver tissue HELP-tagging cytosine methylation data from C57BL/6J mice receiving high-fat diet with or without lingonberries

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DNA methylation profiles of isolated embryonic and adult cardiomyocytes, cardiac fibroblasts, tissue and stem cells.

Project description:To investigate the DNA methylation profiles of matured differentiated cardiomyocytes, DNA methylation profiles were obtained by HELP tagging assay using the isolated cardiomyocytes and cardiac fibroblasts from different developmental stages, tissues and cultured stem cells. DNA methylation in mouse tissues and cells

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