Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Colobanthus quitensis metatranscriptome

PROVIDER: PRJNA1230071 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR32544135_1.fastq.gz	Fastqsanger.gz
	SRR32544135_2.fastq.gz	Fastqsanger.gz
	SRR32544136_1.fastq.gz	Fastqsanger.gz
	SRR32544136_2.fastq.gz	Fastqsanger.gz
	SRR32544137_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Project description:Colobanthus quitensis microbiome

| PRJNA644506 | ENA

Colobanthus quitensis

Project description:Colobanthus quitensis Organism overview

| PRJNA267165 | ENA

Colobanthus quitensis

Project description:Colobanthus quitensis Genome sequencing

| PRJNA1100813 | ENA

Environmental signals act as a driving force for metabolic and defense responses in the Antarctic plant Colobanthus quitensis

Project description:Due to the progressive environmental change that the Antarctic Peninsula has undergone over time, a more comprehensive overview of the metabolic features of Colobanthus quitensis becomes particularly interesting to assess its ability to respond to environmental stresses. To this end, a differential proteomic approach has been used to study the response of C. quitensis to different environmental cues.

2023-03-11 | PXD037324 | Pride

Colobanthus quitensis

Project description:Transcriptome analysis of Colobanthus quitensis

| PRJNA388703 | ENA

Colobanthus quitensis

Project description:Colobanthus quitensis Transcriptome or Gene expression

| PRJNA266912 | ENA

Colobanthus quitensis

Project description:Colobanthus quitensis Transcriptome or Gene expression

| PRJNA266913 | ENA

Colobanthus quitensis

Project description:Colobanthus quitensis Transcriptome or Gene expression

| PRJNA268301 | ENA

Project description:RNA sequencing of Colobanthus quitensis during during post-thaw recovery

| PRJNA1099400 | ENA

Plant and bird presence strongly influences the microbial communities in soils of Admiralty Bay, Maritime Antarctica

Project description:Understanding the environmental factors that shape microbial communities is crucial, especially in extreme environments, like Antarctica. Two main forces were reported to influence Antarctic soil microbes: birds and plants. Both birds and plants are currently undergoing unprecedented changes in their distribution and abundance due to global warming. However, we need to clearly understand the relationship between plants, birds and soil microorganisms. We therefore collected rhizosphere and bulk soils from six different sampling sites subjected to different levels of bird influence and colonized by Colobanthus quitensis and Deschampsia antarctica in the Admiralty Bay, King George Island, Maritime Antarctic. Microarray and qPCR assays targeting 16S rRNA genes of specific taxa were used to assess microbial community structure, composition and abundance and analyzed with a range of soil physico-chemical parameters. The results indicated significant rhizosphere effects in four out of the six sites, including areas with different levels of bird influence. Acidobacteria were significantly more abundant in soils with little bird influence (low nitrogen) and in bulk soil. In contrast, Actinobacteria were significantly more abundant in the rhizosphere of both plant species. At two of the sampling sites under strong bird influence (penguin colonies), Firmicutes were significantly more abundant in D. antarctica rhizosphere but not in C. quitensis rhizosphere. The Firmicutes were also positively and significantly correlated to the nitrogen concentrations in the soil. We conclude that the microbial communities in Antarctic soils are driven both by bird and plants, and that the effect is taxa-specific.

2012-06-01 | GSE33847 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data