Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Argopecten irradians

ABSTRACT: The bay scallop is an important commercial animal

PROVIDER: PRJNA13038 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR1168419_1.fastq.gz	Fastqsanger.gz
	SRR1168419_2.fastq.gz	Fastqsanger.gz
	SRR1171018.fastq.gz	Fastqsanger.gz
	SRR14807778_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 805

Similar Datasets

Argopecten irradians, gills, exposed to okadaic acid

Project description:Differential expression analysis of gill tissues of bay scallop (Argopecten irradians) exposed to okadaic acid at a concentration of 500 nM for 48 h.

2018-12-21 | GSE116508 | GEO

Argopecten irradians, gills, exposed to palmitoleic acid

Project description:Differential expression analysis of gill tissues of bay scallop (Argopecten irradians) exposed to palmitoleic acid at a concentration of 80 mg/L for 48 h.

2019-01-15 | GSE121110 | GEO

Argopecten irradians, gills, exposed to Thiazolidinedione derivatives 49

Project description:Differential expression analysis of gill tissues of bay scallop (Argopecten irradians) exposed to Thiazolidinedione derivatives 49 at a concentration of 0.64 μM for 48 h.

2019-09-18 | GSE133024 | GEO

Argopecten irradians irradians x Argopecten purpuratus

Project description:High-resolution genetic mapping provides insights into heterosis and genomic incompatibility of interspecific hybridization of bay scallop and Peruvian scallop

| PRJNA488174 | ENA

Argopecten irradians breed:zhongkehong

Project description:bay scallop raw sequence reads for carotenoids accumulation BSA

| PRJNA307280 | ENA

Argopecten irradians

Project description:Genome sequencing of the Bay scallops Argopecten irradians irradians and A. i. concentricus

| PRJNA428789 | ENA

effects of water temperature stress in the adductor muscle of Argopecten irradians concentricus by transcriptomics

Project description:Both high and low water temperature stresses are major environmental threats of growth and productivity in aquatic animals. However, the mechanism of response to temperature stress of scallop remains unclear. In this study, Argopecten irradians concentricus treated with high and cold temperature stress were analysed with the transcriptomes, metabolomes and integrated network analysis. Transcriptomic analyses revealed that there were many differentially expressed genes enriched calcium ion, kinase activity, phosphatase activity, and lipid related pathways between high temperature stress group and the control group. Although similar results were found in the low temperature stress group versus the control group, the genes enriched in these pathways were different. Moreover, much more genes were enriched in transcription factor activity in the low temperature stress group versus the control group

2022-01-21 | GSE178138 | GEO

Argopecten irradians irradians

Project description:Argopecten irradians irradians Genome sequencing and assembly

| PRJNA774564 | ENA

Argopecten irradians irradians

Project description:Argopecten irradians irradians Transcriptome or Gene expression

| PRJNA176183 | ENA

Genomic characterization of interspecific hybrids between the scallops Argopecten purpuratus and A. irradians irradians.

Project description:The Peruvian scallop (Argopecten purpuratus) has been introduced to China and has successfully been hybridized with the bay scallop (A. irradians irradians). The F1 hybrids of these two scallops exhibited a large increase in production traits and some other interesting new characteristics. To understand the genetic basis of this heterosis, nuclear gene and partial mtDNA sequences, and genomic in situ hybridization (GISH) were employed to analyze the genomic organization of the hybrids. Amplification of the ribosomal DNA internal transcribed spacer (ITS) showed that the parental ITS sequences were present in all the hybrid individuals, illustrating that the hybrid offspring inherited nuclear DNA from both parents. Sequence analyses of the ITS region further confirmed that the hybrids harbored alleles from their parents; some recombinant variants were also detected, which revealed some alterations in the nuclear genetic material of the hybrids. The analysis of mitochondrial 16S rDNA showed that the hybrids possessed sequences that were identical to the 16S rDNA of the female parents, proving a matrilineal inheritance of mitochondrial genes in scallops. In addition, GISH clearly discriminated between the parental chromosomes and indicated a combination of haploid genomes of duplex parents in the hybrids. The genetic analyses in our study illustrated that the F1 hybrids inherited nuclear material from both parents and cytoplasmic genetic material maternally, and some variations occurred in the genome, which might contribute to a further understanding of crossbreeding and heterosis in scallop species.

| S-EPMC3631176 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data