Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Schizosaccharomyces japonicus

ABSTRACT: small RNA discovery in fission yeast Schizosaccharomyces japonicus

PROVIDER: PRJNA136103 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR096441.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

small RNA discovery in fission yeast Schizosaccharomyces japonicus

Project description:We used massively parallel sequencing to discover and characterize small RNAs (sRNAs) from fission yeast Schizosaccharomyces japonicus. We found that, unlike in related S. pombe, a substantial fraction of sRNAs maps to transposons, both telomeric and centromeric. small RNA library from total RNA isolations from Schizosaccharomyces japonicus

2012-07-26 | E-GEOD-26902 | biostudies-arrayexpress

small RNA discovery in fission yeast Schizosaccharomyces japonicus

2012-07-26 | GSE26902 | GEO

Schizosaccharomyces japonicus

Project description:Small RNA sequences from Schizosaccharomyces japonicus

| PRJNA138031 | ENA

Separable roles for RNAi in regulation of transposable elements and viability in the fission yeast Schizosaccharomyces japonicus [smallRNA-Seq]

Project description:small RNA-seq was performed to identify differences in small RNA complement between wild type and Dcr1 deficent cells in Schizosaccharomyces japonicus.

2022-02-17 | GSE185664 | GEO

Small RNA sequences from Schizosaccharomyces japonicus

Project description:Small interfering RNAs (siRNAs) are known to be involved in both transposon silencing and centromere function, leading us to investigate the interplay between these two roles in the Schizosaccharomyces lineage. In S. pombe, the centromeric repeats produce dicer-dependent siRNAs that are required for maintenance of centromeric structure, function and transcriptional silencing via Argonaute-dependent heterochromatin formation13. However, transposons are silenced in S. pombe by RNAi-independent mechanisms and do not produce abundant siRNAs. To investigate whether centromere-directed siRNA production is conserved within the transposon-rich centromeres of S. japonicus, we isolated and sequenced small RNAs from log-phase S. japonicus cultures. The small RNAs have a modal size of 23 nucleotides and 94% map to transposons, both telomeric and centromeric.

2011-03-09 | GSE27837 | GEO

Small RNA sequences from Schizosaccharomyces japonicus

2011-03-09 | E-GEOD-27837 | biostudies-arrayexpress

Separable roles for RNAi in regulation of transposable elements and viability in the fission yeast Schizosaccharomyces japonicus [RNA-Seq]

Project description:RNA-seq was performed to identify transcripts differentially expressed in Schizosaccharomyces japonicus cells lacking Dcr1.

2022-02-17 | GSE185580 | GEO

Schizosaccharomyces japonicus

Project description:Schizosaccharomyces japonicus Genome sequencing

| PRJNA206994 | ENA

Separable roles for RNAi in regulation of transposable elements and viability in the fission yeast Schizosaccharomyces japonicus [ChIP-Seq]

Project description:ChIP-seq was performed to identify differences in H3K9me2 profiles between wild type and Dcr1 deficent cells in Schizosaccharomyces japonicus.

2022-02-17 | GSE185663 | GEO

RNA sequencing of Schizosaccharomyces pombe cells with the replaced fatty acid synthase complex from Schizosaccharomyces japonicus

Project description:We have identified that these two organisms have quite distinct phospholipid structures - S. pombe phospholipids display canonical symmetric long acyl chains (18 and/ or 16 carbon atoms), and in S. japonicus significant fraction of phospholipids are asymmetrical - one acyl chain is 18 carbon atoms and second one is short - only 10 carbon atoms. Medium chain fatty acid like C10:0 are critical for S. japonicus physiology and are synthesised by the cytosolic fatty acid synthase (FAS) complex. Such findings lead us to address the functional role of these asymmetric lipids and we exchanged FAS between the two fission yeast species. We observed that in S. pombe expressing solely japonicus FAS, the membrane is functionally impaired in a number of ways (e.g. endocytosis, mitosis etc etc) and moreover, it seems that at lower temperatures (such as 24C) the phenotype is more severe compared to the higher temperatures like 30 and 36. We believe that comparative transcriptomic analysis will shed light on what is going on in S. pombe cells with exchanged FAS and therefore displaying an altered lipidome.

2019-12-07 | GSE141579 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data