Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Danio rerio

ABSTRACT: Transcriptome-wide analysis of small RNA expression in early zebrafish development

PROVIDER: PRJNA138095 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR953573.fastq.gz	Fastqsanger.gz
	SRR953574.fastq.gz	Fastqsanger.gz
	SRR953575.fastq.gz	Fastqsanger.gz
	SRR953576.fastq.gz	Fastqsanger.gz
	SRR953577.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Danio rerio

Project description:Zebrafish early eye development

| PRJNA120923 | ENA

Danio rerio

Project description:small RNA sequencing in zebrafish early developmental stages

| PRJNA214855 | ENA

Danio rerio

Project description:microRNA expression during early zebrafish development

| PRJNA92137 | ENA

Danio rerio

Project description:Transcriptome Analysis of Zfpm1 Function in Early Zebrafish Embryogenesis and Postembryonic Heart Development

| PRJNA376117 | ENA

Danio rerio

Project description:Polysome-seq in zebrafish early embryonic development

| PRJNA348537 | ENA

Role of the Exon Junction Complex in Danio rerio

Project description:The exon junction complex (EJC) is composed of three core proteins Rbm8a, Magoh and Eif4a3 and is thought to play a role in several post-transcriptional processes. In this study we focus on understanding the role of EJC in zebrafish development. We identified transcriptome-wide binding sites of EJC in zebrafish via RNA:protein immunoprecipitation followed by deep sequencing (RIP-Seq). We find that, as in human cells, zebrafish EJC is deposited about 24 nts upstream of exon-exon junctions. We also identify transcripts regulated by Rbm8a and Magoh in zebrafish embryos using whole embryo RNA-seq from rbm8a mutant, magoh mutant and wild-type sibling embryos. This study shows that nonsense mediated mRNA decay is dysregulated in zebrafish EJC mutants.

2019-07-30 | GSE135019 | GEO

Danio rerio

Project description:Transcriptome analysis of Traf6 function in early zebrafish embryogenesis

| PRJNA183692 | ENA

Danio rerio

Project description:The functions of igf2bp3 during zebrafish early development

| PRJNA565584 | ENA

Danio rerio

Project description:PRMT6 knockdown effects on the early zebrafish development

| PRJNA269151 | ENA

Danio rerio

Project description:Analysis of gene expression during the early stages of zebrafish heart valve development