Arabidopsis thaliana
Ontology highlight
ABSTRACT:
OTHER RELATED OMICS DATASETS IN: GSE8031
PROVIDER: PRJNA140363 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:gnp06-01_agriarray - multiplexage : dual-target hybridization microarray experiment - Several factors affect today a more extended use of microarrays for research and as a diagnosis tool. These factors are the experimental cost, the reproducibility of the measurements and the format of the analyses. This project aims at bringing solutions in these three domains by optimizing multiplexed analyses in order to reduce cost and enhance the number of samples treated simultaneously; by proposing new couples flurophores / slide surface in order to increase the signal precision and by developing new applications such as Comparative Genomic Hybridization (GGH) or Promoter Arrays to bring the plant microarray beyond transcriptome analyses. Altogether, these approaches will allow us to construct an optimized diagnostic tool based on 96 well microplate microarrays. This multidisciplinary project bring together biologists, chemists, physicists and mathematicians to develop innovative solutions for future application of DNA microarrays. - Dual-target hybridization microarray experiment with doble factors comparison : two mutants and its wild-types at different times. The aim of this part is to compare the classical design with the new design with a third dye.
2011-12-08 | GSE29104 | GEO
Project description:nitrogen starvation -New developments towards a genetic and diagnosis use of plant mircoarrays
| PRJNA140361 | ENA
Project description:gnp06-01_agriarray - nitrogen starvation - Several factors affect today a more extended use of microarrays for research and as a diagnosis tool. These factors are the experimental cost, the reproducibility of the measurements and the format of the analyses. This project aims at bringing solutions in these three domains by optimizing multiplexed analyses in order to reduce cost and enhance the number of samples treated simultaneously; by proposing new couples flurophores / slide surface in order to increase the signal precision and by developing new applications such as Comparative Genomic Hybridization (GGH) or Promoter Arrays to bring the plant microarray beyond transcriptome analyses. Altogether, these approaches will allow us to construct an optimized diagnostic tool based on 96 well microplate microarrays. This multidisciplinary project bring together biologists, chemists, physicists and mathematicians to develop innovative solutions for future application of DNA microarrays. - Dual-target hybridization microarray experiment.
2011-12-08 | GSE29103 | GEO
Project description:gnp06-01_agriarray - multiplexage : dual-target hybridization microarray experiment - Several factors affect today a more extended use of microarrays for research and as a diagnosis tool. These factors are the experimental cost, the reproducibility of the measurements and the format of the analyses. This project aims at bringing solutions in these three domains by optimizing multiplexed analyses in order to reduce cost and enhance the number of samples treated simultaneously; by proposing new couples flurophores / slide surface in order to increase the signal precision and by developing new applications such as Comparative Genomic Hybridization (GGH) or Promoter Arrays to bring the plant microarray beyond transcriptome analyses. Altogether, these approaches will allow us to construct an optimized diagnostic tool based on 96 well microplate microarrays. This multidisciplinary project bring together biologists, chemists, physicists and mathematicians to develop innovative solutions for future application of DNA microarrays. - Dual-target hybridization microarray experiment with doble factors comparison : two mutants and its wild-types at different times. The aim of this part is to compare the classical design with the new design with a third dye. 47 dye-swap - genotype and ecotype comparison
2011-12-08 | E-GEOD-29104 | biostudies-arrayexpress
Project description:gnp06-01_agriarray - nitrogen starvation - Several factors affect today a more extended use of microarrays for research and as a diagnosis tool. These factors are the experimental cost, the reproducibility of the measurements and the format of the analyses. This project aims at bringing solutions in these three domains by optimizing multiplexed analyses in order to reduce cost and enhance the number of samples treated simultaneously; by proposing new couples flurophores / slide surface in order to increase the signal precision and by developing new applications such as Comparative Genomic Hybridization (GGH) or Promoter Arrays to bring the plant microarray beyond transcriptome analyses. Altogether, these approaches will allow us to construct an optimized diagnostic tool based on 96 well microplate microarrays. This multidisciplinary project bring together biologists, chemists, physicists and mathematicians to develop innovative solutions for future application of DNA microarrays. - Dual-target hybridization microarray experiment. 2 dye-swap - time course,tissue comparison
2011-12-08 | E-GEOD-29103 | biostudies-arrayexpress
Project description:Agilent custom designed array comparative genomic hybridization (CGH) was performed on 235 samples with a dual diagnosis of schizophrenia and epilepsy and 80 samples with a dual diagnosis of bipolar and epilpsy. ArrayCGH on 191 psychiatric screened controls was also performed. A common male reference was used for all samples and controls. Samples and controls were obtained from the NIMH cell line repositories.
2010-12-31 | GSE23703 | GEO
Project description:Agilent custom designed array comparative genomic hybridization (CGH) was performed on 235 samples with a dual diagnosis of schizophrenia and epilepsy and 80 samples with a dual diagnosis of bipolar and epilpsy. ArrayCGH on 191 psychiatric screened controls was also performed. A common male reference was used for all samples and controls. Samples and controls were obtained from the NIMH cell line repositories. 235 samples with a dual diagnosis of schizophrenia and epilepsy, 80 samples with a dual diagnosis of bipolar and epilepsy, and 191 psychiatric screened controls
2010-12-31 | E-GEOD-23703 | biostudies-arrayexpress
Project description:Heterogous hybridization experiment
| PRJNA88017 | ENA
Project description:We ran for each studied culture (WCFS1 NZ7608 NZ7602 and NZ7603) an independent shake flask cultivation and designed one experiment. The hybridization scheme (4 arrays) of the experiment was as follows: WCFS1_respiratory NZ7608_respiratory NZ7602_respiratory NZ7603_respiratory WCFS1_respiratory. In the experiment we studied the difference in response towards respiratory cultivation (OXYGEN HEME and VITAMIN K2) of each strain compared to wild type Keywords: comparative genomic hybridization
2007-08-16 | GSE8744 | GEO
Project description:We compared the gene expression profile in the dorsolateral prefrontal area of subjects with dual diagnosis who died by suicide to the transcriptome of subjects with mood disorders and subjects with substance use disorder who died by suicide.
2019-12-02 | GSE125681 | GEO