Homo sapiens
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA142151 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Mulcom: a multiple comparison statistical test for microarray data in Bioconductor (Illumina)
| PRJNA142155 | ENA
Project description:This SuperSeries is composed of the following subset Series: GSE26732: Mulcom: a multiple comparison statistical test for microarray data in Bioconductor (Affymetrix) GSE26735: Mulcom: a multiple comparison statistical test for microarray data in Bioconductor (Illumina) Refer to individual Series
2011-08-09 | E-GEOD-26736 | biostudies-arrayexpress
Project description:Performance comparison of Affymetrix and Illumina microarray technologies_AffymetrixDataset
| PRJNA109231 | ENA
Project description:Performance comparison of Affymetrix and Illumina microarray technologies_IlluminaDataSet
| PRJNA109007 | ENA
Project description:Affymetrix SNP6.0 microarray data - Myelodysplastic syndromes
| PRJNA131331 | ENA
Project description:Comparison of Nanostring nCounter data on FFPE colon cancer samples and Affymetrix microarray data on matched frozen tissues
| PRJNA266226 | ENA
Project description:Kynureninase is a member of a large family of catalytically diverse but structurally homologous pyridoxal 5'-phosphate (PLP) dependent enzymes known as the aspartate aminotransferase superfamily or alpha-family. The Homo sapiens and other eukaryotic constitutive kynureninases preferentially catalyze the hydrolytic cleavage of 3-hydroxy-l-kynurenine to produce 3-hydroxyanthranilate and l-alanine, while l-kynurenine is the substrate of many prokaryotic inducible kynureninases. The human enzyme was cloned with an N-terminal hexahistidine tag, expressed, and purified from a bacterial expression system using Ni metal ion affinity chromatography. Kinetic characterization of the recombinant enzyme reveals classic Michaelis-Menten behavior, with a Km of 28.3 +/- 1.9 microM and a specific activity of 1.75 micromol min-1 mg-1 for 3-hydroxy-dl-kynurenine. Crystals of recombinant kynureninase that diffracted to 2.0 A were obtained, and the atomic structure of the PLP-bound holoenzyme was determined by molecular replacement using the Pseudomonas fluorescens kynureninase structure (PDB entry 1qz9) as the phasing model. A structural superposition with the P. fluorescens kynureninase revealed that these two structures resemble the "open" and "closed" conformations of aspartate aminotransferase. The comparison illustrates the dynamic nature of these proteins' small domains and reveals a role for Arg-434 similar to its role in other AAT alpha-family members. Docking of 3-hydroxy-l-kynurenine into the human kynureninase active site suggests that Asn-333 and His-102 are involved in substrate binding and molecular discrimination between inducible and constitutive kynureninase substrates.
| S-EPMC2531291 | biostudies-literature
Project description:RNA extracted at 240min. Samples are rRNA depleted. Expression measurement of Homo sapiens genes.
2019-07-31 | GSE114179 | GEO