Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Glycine max

ABSTRACT: Transcript profiling of soybean msh1 RNAi transgenic lines

OTHER RELATED OMICS DATASETS IN: E-GEOD-30281

PROVIDER: PRJNA143901 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Glycine max

Project description:Transcript profiling reveals expression differences in wild-type and glabrous soybean lines

| PRJNA149185 | ENA

Transgenic soybeans (Glycine max) secreting Phosphoinositide-3-phosphate binding proteins show enhanced resistance to oomycete pathogen Phytophthora sojae

Project description:We created stable transgenic soybean plants that express and secrete two different PI3P-binding proteins, GmPH1 and VAM7, in an effort to interfere with effector delivery and confer resistance. Soybean plants expressing the two PI3P-binding proteins exhibited reduced infection by the oomycete pathogen Phytophthora sojae compared to control lines. Measurements of nodulation by nitrogen-fixing mutualistic bacterium Bradyrhizobium japonicum, which does not produce PI3P, revealed that the two lines with the highest levels of GmPH1 transcripts exhibited reductions in nodulation and in benefits from nodulation. Transcriptome and plant hormone measurements were made of soybean lines with the highest transcript levels of GmPH1 and VAM7, as well as controls, following P. sojae- or mock-inoculation. The results revealed increased levels of infection-associated transcripts in the transgenic lines, compared to controls, even prior to P. sojae infection, suggesting that the plants were primed for increased defense.

2022-07-07 | GSE201739 | GEO

Transcript profiling of soybean msh1 RNAi transgenic lines

Project description:The soybean msh1 RNAi transgenic line show various growth phenotype. We use microarray analysis to characterize gene expression pattern for two of the phenotypes - variegation and stunted growth. Wild type and msh1 RNAi variegated and stunted tissues were collected for RNA extration and hybridization on Affymetrix.

2011-11-29 | E-GEOD-30112 | biostudies-arrayexpress

Transcript profiling of Arabidopsis albino msh1 mutants

Project description:The soybean msh1 RNAi transgenic line show various growth phenotype. We use microarray analysis to characterize gene expression pattern for two of the phenotypes - variegation and stunted growth. Wild type and Arabidopsis msh1 mutant albino tissues were collected for RNA extration and hybridization on Affymetrix.

2011-11-29 | E-GEOD-30281 | biostudies-arrayexpress

Transcript profiling of Arabidopsis albino msh1 mutants

2011-11-29 | GSE30281 | GEO

Transcript profiling of soybean msh1 RNAi transgenic lines

2011-11-29 | GSE30112 | GEO

Glycine max

Project description:Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle

| PRJNA140081 | ENA

Glycine max

Project description:Expression in AtBBX32 Transgenic Soybean

| PRJNA144179 | ENA

Glycine max

Project description:Identification and characterization of transcript polymorphisms in soybean lines varying in oil composition and content

| PRJNA242863 | ENA

Comparative genomic hybridization analysis in glycine max fast neutron mutants

Project description:Soybean fast neutron mutant lines were maintained to an advanced generation (ranging between approximately M6 and M11) and compared to their wild-type parent (M92-220-Long) using CGH to identify sequence deletions and duplications in the mutant plants.

2018-08-16 | GSE118590 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data