Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Entamoeba histolytica

ABSTRACT: Whole genome bisulfite sequencing of Entamoeba histolytica

PROVIDER: PRJNA146109 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR331122_1.fastq.gz	Fastqsanger.gz
	SRR331122_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Whole genome bisulfite sequencing of Entamoeba histolytica

Project description:Up until now, the existence of Dnmt2-mediated DNA methylation has mostly been supported by focal analyses in organisms that contain Dnmt2, but no Dnmt1 or Dnmt3 DNA methyltransferase. In these organisms, several independent studies have also provided support for a biologically important function of Dnmt2-dependent DNA methylation. For example, Dnmt2-dependent methylation in Entamoeba histolytica, the causative agent of amebic dysentery, has been connected to the parasite s virulence. However, global DNA methylation levels in Entamoeba have been found to be very low. In addition, no specific features, such as CpG-specificity and specificity for certain genetic subcompartments have been described. This distinguishes Dnmt2-dependent methylation patterns from all other known methylomes and has raised questions about the validity of the underlying results. We have used whole-genome bisulfite sequencing for an unbiased characterization of the Entamoeba histolytica methylome at single-base resolution in a E.histolytica strain HM-1:IMSS devoid of significant level of EhDnmt2 (Ehmeth) expression.

2011-08-10 | GSE31295 | GEO

Whole genome bisulfite sequencing of Entamoeba histolytica

2011-08-10 | E-GEOD-31295 | biostudies-arrayexpress

Entamoeba histolytica KU48

Project description:Entamoeba histolytica KU48

| PRJNA51235 | ENA

Entamoeba histolytica KU27

Project description:Entamoeba histolytica KU27 genome sequencing project

| PRJNA51233 | ENA

Entamoeba histolytica 2759071

Project description:Entamoeba histolytica 2759071 genome sequencing project

| PRJNA51251 | ENA

Entamoeba histolytica 2759071

Project description:Entamoeba histolytica 2759071 genome sequencing project

| PRJNA51229 | ENA

Entamoeba histolytica KU50

Project description:Entamoeba histolytica KU50 genome sequencing project

| PRJNA51231 | ENA

Entamoeba histolytica

Project description:Comparative genome sequencing project of Entamoeba histolytica strains

| PRJNA51433 | ENA

Gene expression in phagocytic and non-phagocytic Entamoeba histolytica populations

Project description:The ability of Entamoeba histolytica to phagocytose host cells correlates to observed virulence in vivo. To better understand the mechanism of phagocytosis we used paramagnetic beads coated with host ligand and sorted trophozoites based on phagocytic ability. Gene expression was then measured in both the sorted phagocytic and non-phagocytic populations using a custom Affymetrix chip for E. histolytica. Feed forward regulation of phagocytosis by Entamoeba histolytica. Infection and Immunity. PMID 23045476

2012-10-16 | GSE41604 | GEO

Entamoeba histolytica

Project description:Genome sequencing of clinically important strains of Entamoeba histolytica

| PRJNA9532 | ENA