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Arabidopsis thaliana

ABSTRACT: An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis [BS-seq]

PROVIDER: PRJNA155799 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR420834.fastq.gz	Fastqsanger.gz
	SRR420835.fastq.gz	Fastqsanger.gz
	SRR420836.fastq.gz	Fastqsanger.gz
	SRR420837.fastq.gz	Fastqsanger.gz
	SRR420838.fastq.gz	Fastqsanger.gz

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An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis

Project description:This SuperSeries is composed of the following subset Series: GSE36129: An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis [leaves RNA-seq] GSE36143: An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis [BS-seq] GSE37206: An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis [flowers RNA-seq] Refer to individual Series

2012-05-25 | E-GEOD-36148 | biostudies-arrayexpress

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IDN2 Interacts with RPA and Facilitates DNA Double-Strand Break Repair by Homologous Recombination in Arabidopsis

Project description:Repair of DNA double-strand break (DSB) is critical for the maintenance of genome integrity. We have previously shown that a class of DSB-induced small RNAs (diRNAs) facilitates homologous recombination (HR)-mediated DSB repair in Arabidopsis thaliana. Here we show that INVOLVED IN DE NOVO 2 (IDN2), a double-stranded RNA (dsRNA) binding protein involved in small RNA-directed DNA methylation, is required for DSB repair in Arabidopsis. We find that IDN2 interacts with the heterotrimeric replication protein A (RPA) complex. Depletion of IDN2 or the diRNA-binding ARGONAUTE 2 (AGO2) leads to increased accumulation of RPA at DSB sites and mislocalization of the recombination factor RAD51. These findings support a model in which IDN2 interacts with RPA and facilitates the release of RPA from ssDNA tails and subsequent recruitment of RAD51 at DSB sites to promote DSB repair.

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