Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gut metagenome

ABSTRACT: Iberian lynx fecal Metagenome

PROVIDER: PRJNA158313 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR1198997.fastq.gz	Fastqsanger.gz
	SRR522476.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Gut metagenome/FINRISK 2002 (Salosensaari et al. Nature Comms 2021)

Project description:The main goal of the project is the study the associations between the gut metagenome and human health. The dataset contains data for n=7211 FINRISK 2002 participants who underwent fecal sampling. Demultiplexed shallow shotgun metagenomic sequences were quality filtered and adapter trimmed using Atropos (Didion et al., 2017), and human filtered using Bowtie2 (Langmead and Salzberg, 2012).

| EGAS00001005020 | EGA

Gut metagenome/FR 2002 (Salosensaari et al. Nature Comms 2021)

| EGAS00001005038 | EGA

Iberian and Eurasian lynx 6x samples

Project description:Iberian and Eurasian lynx 6x samples

| PRJEB44874 | ENA

Reconstruction of the personal information from human genome reads in gut metagenome sequencing data

Project description:Human DNA present in fecal samples can result in a small number of human reads in gut shotgun metagenomic sequencing data. However, it is currently unclear how much personal information can be reconstructed from such reads and this has not been quantitatively evaluated. Such a quantitative evaluation is necessary to clarify the ethical concerns related to data sharing and to enable the efficient use of human genetic information in stool samples, such as for research and forensics. Here, we used genomic approaches to reconstruct personal information from fecal metagenomes of 343 Japanese individuals with associated human genotype data. Our approach can be used to quantify the personal information contained within gut metagenome data.

| EGAS00001007027 | EGA

gut metagenome

Project description:Buffalo fecal Metagenome

| PRJNA322229 | ENA

gut metagenome

Project description:Piglet fecal Metagenome

| PRJNA244065 | ENA

gut metagenome

Project description:Shrew fecal metagenome

| PRJDB3158 | ENA

gut metagenome

Project description:CAT fecal Metagenome