Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Calothrix sp. PCC 7507

ABSTRACT: Calothrix sp. PCC 7507 Genome sequencing

PROVIDER: PRJNA158683 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR610371_1.fastq.gz	Fastqsanger.gz
	SRR610371_2.fastq.gz	Fastqsanger.gz
	GCA_000316575.1_sequence_report.txt	Txt

Items per page:

1 - 3 of 3

Similar Datasets

Calothrix sp. PCC 6303

Project description:Calothrix sp. PCC 6303 Genome sequencing

| PRJNA158041 | ENA

Calothrix sp. PCC 7103

Project description:Calothrix sp. PCC 7103 Genome sequencing and assembly

| PRJNA159495 | ENA

Calothrix sp. strain:PCC 7716

Project description:Complete genome sequencing of Calothrix sp. PCC 7716

| PRJDB11994 | ENA

Photophysiological and Genetic Factors Underlying Fast Photosynthetic Growth of Unicellular Cyanobacterium Synechococcus sp. PCC 7002

Project description:Application of genome-scale 'omics approaches to dissect subcellular pathways and regulatory networks governing the fast-growing response of Synechococcus sp. PCC 7002 response to variable irradience levels. We employed controlled cultivation and next-generation sequencing technology to identify transcriptional responses of euryhaline unicellular cyanobacterium Synechococcus sp. PCC 7002 grown under steady state conditions at six irradiance levels ranging from 33 to 760 µmol photons m-2 sec-1.

2015-09-04 | E-GEOD-72691 | biostudies-arrayexpress

Calothrix sp. 336/3

Project description:Calothrix sp. 336/3 Genome sequencing

| PRJNA255071 | ENA

Calothrix sp. 336/3

Project description:Calothrix sp. 336/3 Genome sequencing

| PRJNA205421 | ENA

Synechocystis sp. PCC 6803 trophic condition

Project description:Targeted proteome analysis of Synechocystis sp. PCC 6803 under photoautotrophic and mixotrophic conditions

2020-06-02 | PXD010010 | JPOST Repository

Photophysiological and Genetic Factors Underlying Fast Photosynthetic Growth of Unicellular Cyanobacterium Synechococcus sp. PCC 7002

2015-09-04 | GSE72691 | GEO

Proteogenomic annotation provides new insight into nitrogen metabolism of Nostoc sp. PCC 7120

Project description:Proteogenomics analysis was employed to refine the genome annotation and provide new insights into nitrogen metabolism of Nostoc sp. PCC 7120.

2021-08-05 | PXD027697 |

RNA profiling of Synechococcus sp. PCC 7002 exposed to acrylic acid

Project description:Cyanobacteria are valuable organisms for studying the physiology of photosynthesis and carbon fixation as well as metabolic engineering for the production of fuels and chemicals. This work describes a novel counter selection method for the cyanobacterium Synechococcus sp. PCC 7002 based on organic acid toxicity. The organic acids acrylate, 3-hydroxypropionate, and propionate were shown to be inhibitory towards PCC 7002 and other cyanobacteria at low concentrations. Inhibition was overcome by a loss of function mutation in the gene acsA. Loss of AcsA function was used as a basis for an acrylate counter selection method. DNA fragments of interest were inserted into the acsA locus and strains harboring the insertion were isolated on selective medium containing acrylate. This methodology was also used to introduce DNA fragments into a pseudogene, glpK. Application of this method will allow for more advanced genetics and engineering studies in PCC 7002 including the construction of markerless gene deletions and insertions. The acrylate counter-selection could be applied to other cyanobacterial species where AcsA activity confers acrylate sensitivity (e.g. Synechocystis sp. PCC 6803).

2013-07-19 | GSE48981 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data