Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Saprolegnia parasitica CBS 223.65

ABSTRACT: Saprolegnia parasitica CBS 223.65 Transcriptome

PROVIDER: PRJNA164643 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR515936_1.fastq.gz	Fastqsanger.gz
	SRR515936_2.fastq.gz	Fastqsanger.gz
	SRR515937_1.fastq.gz	Fastqsanger.gz
	SRR515937_2.fastq.gz	Fastqsanger.gz
	SRR515938_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 28

Similar Datasets

Saprolegnia parasitica CBS 223.65

Project description:Saprolegnia parasitica CBS 223.65 genome sequencing project.

| PRJNA36583 | ENA

Saprolegnia parasitica

Project description:Saprolegnia parasitica overview

| PRJNA43703 | ENA

Saprolegnia parasitica

Project description:Saprolegnia parasitica Transcriptome or Gene expression

| PRJNA308415 | ENA

Saprolegnia parasitica N12

Project description:Saprolegnia parasitica N12 Genome Sequencing

| PRJNA164645 | ENA

Saprolegnia parasitica proteome

Project description:In this project, we made a comprehensive quantitative proteomic analysis of four defined developmental stages of S. parasitica (mycelium, primary cysts, secondary cysts and germinated cysts) to gain greater insight into the types of proteins specifically linked to each stage. A total of 2423 unique proteins were identified using qualitative (gel-based) and quantitative (iTRAQ, isobaric tags for relative and absolute quantitation) approaches. Of these, 358 proteins, associated with various biological processes, were found to be significantly enriched between different life cycle stages of S. parasitica. The transcript abundance of several cyst and mycelium enriched proteins was also checked by quantitative real-time PCR. This is the first large scale proteomic analysis on Saprolegnia and the data from this study will enhance our current knowledge about this pathogen by identifying biological processes key to each developmental stage.

2018-08-10 | PXD004695 | Pride

Detergent-resistant microdomains in Saprolegnia parasitica

Project description:Oomycete cells are surrounded by a polysaccharide rich cell wall matrix that, in addition to being essential for cell growth, also functions as protective ”armour”. It follows, that the enzymes responsible for the synthesis of the cell wall provide potential targets for disease management. Interestingly, the oomycete cell wall enzymes are predicted to be plasma membrane proteins. In this project, we used a quantitative (iTRAQ) mass spectrometry-based proteomics approach to characterize the plasma membrane proteome of the hyphal cells of S. parasitica, providing the first complete plasma membrane proteome of an oomycete species. Of significance, is the identification of proteins enriched in functional microdomains (Detergent-Resistant Microdomains; DRMs). In silico analysis showed that DRM-enriched proteins are mainly involved in both molecular transport and β-1,3-glucan synthesis, potentially contributing to post infection pathogenesis.

2024-06-13 | PXD010817 | Pride

Saprolegnia diclina VS20

Project description:Saprolegnia diclina VS20 Transcriptome Sequencing

| PRJNA182526 | ENA

Saprolegnia diclina VS20

Project description:Saprolegnia diclina VS20 Transcriptome Sequencing

| PRJNA182527 | ENA

Saprolegnia diclina VS20

Project description:Saprolegnia diclina VS20 Transcriptome Sequencing

| PRJNA182528 | ENA

Saprolegnia diclina

Project description:Saprolegnia diclina overview