Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Nanoarchaeum equitans

ABSTRACT: Nanoarchaeum equitans small RNA analysis

PROVIDER: PRJNA169032 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR514574.fastq.gz	Fastqsanger.gz
	SRR514575.fastq.gz	Fastqsanger.gz
	SRR514576.fastq.gz	Fastqsanger.gz
	SRR514577.fastq.gz	Fastqsanger.gz
	SRR514578.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Nanoarchaeum equitans small RNA analysis

Project description:We report the profiling of small RNAs from Nanoarchaeum equitans by high-throughput sequencing. Over 16 million Illumina HiSeq 2000 reads were mapped to the 490,885-nucleotide small genome of Nanoarchaeum equitans. The mapping allowed the identification of highly abundant C/D box sRNAs and crRNAs in an organism that has to import its nucleotides from Ignicoccus hospitalis. The precursor tRNA halves of trans-spliced tRNAs were identified. Analysis of small RNA from one sample of Nanoarchaeum equitans.

2012-06-20 | E-GEOD-38821 | biostudies-arrayexpress

Nanoarchaeum equitans small RNA analysis

2012-06-20 | GSE38821 | GEO

Identification of the molecular basis of anti-cancer effect of Huaier.

Project description:Intervention type:DRUG. Intervention1:Huaier, Dose form:GRANULES, Route of administration:ORAL, intended dose regimen:20 to 60/day by either bulk or split for 3 months to extended term if necessary. Control intervention1:None. Primary outcome(s): For mRNA libraries, focus on mRNA studies. Data analysis includes sequencing data processing and basic sequencing data quality control, prediction of new transcripts, differential expression analysis of genes. Gene Ontology (GO) and the KEGG pathway database are used for annotation and enrichment analysis of up-regulated genes and down-regulated genes. For small RNA libraries, data analysis includes sequencing data process and sequencing data process QC, small RNA distribution across the genome, rRNA, tRNA, alignment with snRNA and snoRNA, construction of known miRNA expression pattern, prediction New miRNA and Study of their secondary structure Based on the expression pattern of miRNA, we perform not only GO / KEGG annotation and enrichment, but also different expression analysis.. Timepoint:RNA sequencing of 240 blood samples of 80 cases and its analysis, scheduled from June 30, 2022..

| 2612481 | ecrin-mdr-crc

Life on the edge: Functional genomic response of Ignicoccus hospitalis to cellular takeover by Nanoarchaeum equitans

2014-04-24 | GSE57033 | GEO

Homo sapiens

Project description:Small RNA analysis

| PRJDB3120 | ENA

Homo sapiens

Project description:Small RNA analysis

| PRJNA289949 | ENA

Nanoarchaeum

Project description:Nanoarchaeum sp. overview

| PRJNA235351 | ENA

Life on the edge: Functional genomic response of Ignicoccus hospitalis to cellular takeover by Nanoarchaeum equitans

Project description:Investigation of changes in global gene expression patterns as Ignicoccus hospitalis becomes increasingly populated by Nanoarchaeum equitans These microarray data are complemented by shot gun proteomics (see manuscript) A total of 16 chips were used (each experimental sample was done in duplicate, totally 8 samples) to examine total RNA from I. hospiatalis over a time course grown in pure culture and in co-culture with N. equitans.

2014-04-24 | E-GEOD-57033 | biostudies-arrayexpress

Preliminary study on the protective effects of habitual intake of BLP on the colorectal tumors

Project description:Primary outcome(s): RNA from blood;Immunome analysis

| 2640624 | ecrin-mdr-crc

Methanopyrus kandleri AV19

Project description:Methanopyrus kandleri small RNA analysis

| PRJNA192683 | ENA