Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Habrotrocha rosa

ABSTRACT: Habrotrocha rosa Mitochondrial Transcripts

PROVIDER: PRJNA169047 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR515236.fastq.gz	Fastqsanger.gz
	SRR516048.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Transcriptome and gene expression analysis during flower blooming in Rosa chinensis ‘Pallida’

Project description:Rosa chinensis ‘Pallida’ (Rosa L.) is one of the most important ancient rose cultivars originating from China. It contributed the ‘tea scent’ trait to modern roses. However, little information is available on the gene regulatory networks involved in scent biosynthesis and metabolism in Rosa. In this study, the transcriptome of R. chinensis ‘Pallida’ petals at different developmental stages, from flower buds to senescent flowers, was investigated using Illumina sequencing technology. De novo assembly generated 89,614 clusters with an average length of 428 bp. Based on sequence similarity search with known proteins, 62.9% of total clusters were annotated. Out of these annotated transcripts, 25,705 and 37,159 sequences were assigned to gene ontology and clusters of orthologous groups, respectively. The dataset provides information on transcripts putatively associated with known scent metabolic pathways. Digital gene expression (DGE) was obtained using RNA samples from flower bud, open flower and senescent flower stages. Comparative DGE and quantitative real time PCR permitted the identification of five transcripts encoding proteins putatively associated with scent biosynthesis in roses. The study provides a foundation for scent-related genes discovery in roses.

2015-01-01 | GSE54486 | GEO

Rosa Damascena Stem Cell-derived Exosome

Project description:Analysis of Rosa Damascena Stem Cell-derived Exosome

2023-08-21 | PXD043169 | Pride

Effect of Rosa roxburghii fruit extracts to gene expression of mesenchymal stem cells

Project description:Here we found Rosa roxburghii fruit extracts effectively increase TERT expression and telomerase activity in cultured human mesenchymal stem cells. Both Rosa roxburghii fruit extracts by freeze drying and spray drying methods increase the activity of telomerase. Rosa roxburghii fruit freeze drying extracts is able to reduce reactive oxygen species levels, enhance SOD activity and resistance to oxidative stress, and reduce DNA damage caused by oxidative stress or radiation. Rosa roxburghii fruit extracts promoted cell proliferation, improved senescent cell morphology, delayed replicative cellular senescence, attenuated cell cycle supressors and alleviated the senescence-associated secretory phenotype. Transcriptome and metabolic profilings found that Rosa roxburghii fruit extract promote cell proliferation and DNA repair pathways, decreased triglycerides as well. Overall, we provided a theoretical basis for the application of Rosa roxburghii fruit as an anti-aging natural product.

2024-04-01 | GSE261987 | GEO

Rosa chinensis x Rosa wichuriana

Project description:Rosa chinensis x Rosa wichuriana Raw sequence reads

| PRJNA516159 | ENA

Rosa chinensis breed:Rosa chinensis

Project description:Rosa chinensis breed:Rosa chinensis Raw sequence reads

| PRJNA905852 | ENA

Deep sequencing and analysis of small RNAs from the flowers of four Rosa

Project description:High-throughput sequencing was employed to identify conserved and variable microRNAs among 4 Rosa

2014-07-11 | GSE39882 | GEO

Cerartitis rosa and Ceratitis quilicii

Project description:Mitochondrial genomes of Ceratitis rosa and Ceratitis quilicii

| PRJNA680883 | ENA

Deep sequencing and analysis of small RNAs from the flowers of four Rosa

Project description:High-throughput sequencing was employed to identify conserved and variable microRNAs among 4 Rosa floral sRNA profiles generated from Rosa (Vital, Marrussia, Simpas, Haedang)

2014-07-11 | E-GEOD-39882 | biostudies-arrayexpress

RNASeq of adipocytes from ROSA vs BMPR2 DELX mice

Project description:We sequenced RNA from adipocytes of ROSA and BMPR2 DELX transgenic mice

2019-02-18 | GSE94784 | GEO

Rosa multiflora

Project description:Rosa multiflora

| PRJNA72313 | ENA