Project description:Phosphate starvation/sufficient rice seedling, root or shoot Pi-starvation or Pi-sufficient stresses responsible rice genes, including previously unannotated genes were identified by Illumina mRNA-seq technology. 53 million reads from Pi-starvation or Pi-sufficient root or shoot tissues were uniquely mapped to the rice genome, and these included 40574 RAP3 transcripts in root and 39748 RAP3 transcripts in shoot. We compared our mRNA-seq expression data with that from Rice 44K oligomicroarray, and about 95.5% (root) and 95.4% (shoot) transcripts supported by the array were confirmed expression both by the array and by mRNA-seq, Moreover, 11888 (root) and 11098 (shoot) RAP genes which were not supported by array, were evidenced expression with mRNA-seq. Furthermore, we discovered 8590 (root) and 8193 (shoot) previously unannotated transcripts upon Pi-starvation and/or Pi-sufficient.

2012-01-06 | E-MTAB-4302 | biostudies-arrayexpress

Oryza sativa Japonica Group

Project description:Regulation of histone methylation and gene expression reprogramming in rice inflorescence meristem

| PRJNA282397 | ENA

Oryza sativa Japonica Group

Project description:Rice stem at early stage growth: Control vs.Chromosome segment substitution lines (SLs) from a cross the Koshihikari (japonica) and Habataki (indica)

| PRJNA152105 | ENA

Oryza sativa Japonica Group

Project description:Gene expression profile of rice leaf from selected cultivars

| PRJNA247402 | ENA

Oryza sativa Japonica Group

Project description:Rice global gene expression profile in response to plant hormones

| PRJNA170876 | ENA

Oryza sativa Japonica Group

Project description:Gene expression profile of rice shoot in response to macronutrient deficiency

| PRJNA278401 | ENA

Oryza sativa Japonica Group

Project description:Gene expression profile of rice root in response to macronutrient deficiency

| PRJNA297881 | ENA

Oryza sativa Japonica Group

Project description:Continuous gene expression profile of leaf throughout the entire growth in rice

| PRJNA129493 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data