Project description:Phosphate starvation/sufficient rice seedling, root or shoot Pi-starvation or Pi-sufficient stresses responsible rice genes, including previously unannotated genes were identified by Illumina mRNA-seq technology. 53 million reads from Pi-starvation or Pi-sufficient root or shoot tissues were uniquely mapped to the rice genome, and these included 40574 RAP3 transcripts in root and 39748 RAP3 transcripts in shoot. We compared our mRNA-seq expression data with that from Rice 44K oligomicroarray, and about 95.5% (root) and 95.4% (shoot) transcripts supported by the array were confirmed expression both by the array and by mRNA-seq, Moreover, 11888 (root) and 11098 (shoot) RAP genes which were not supported by array, were evidenced expression with mRNA-seq. Furthermore, we discovered 8590 (root) and 8193 (shoot) previously unannotated transcripts upon Pi-starvation and/or Pi-sufficient.

2012-01-06 | E-MTAB-4302 | biostudies-arrayexpress

Oryza sativa Japonica Group

Project description:Regulation of histone methylation and gene expression reprogramming in rice inflorescence meristem

| PRJNA282397 | ENA

Oryza sativa Japonica Group

Project description:Rice stem at early stage growth: Control vs.Chromosome segment substitution lines (SLs) from a cross the Koshihikari (japonica) and Habataki (indica)

| PRJNA152105 | ENA

Oryza sativa Japonica Group

Project description:Gene expression profile of rice leaf from selected cultivars

| PRJNA247402 | ENA

Oryza sativa Japonica Group

Project description:Rice global gene expression profile in response to plant hormones

| PRJNA170876 | ENA

Oryza sativa Japonica Group

Project description:Gene expression profile of rice root in response to macronutrient deficiency

| PRJNA297881 | ENA

Oryza sativa Japonica Group

Project description:Gene expression profile of rice shoot in response to macronutrient deficiency

| PRJNA278401 | ENA

Oryza sativa Japonica Group

Project description:Gene expression profile of rice root in response to phosphorus deficiency condition

| PRJNA297878 | ENA

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