Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Colletotrichum orbiculare MAFF 240422 strain:104-T

ABSTRACT: Colletotrichum orbiculare MAFF 240422 strain:104-T Genome sequencing and assembly

PROVIDER: PRJNA171217 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	AMCV02.dat.gz	Other
	AMCV02.fasta.gz	Fasta.gz
	AMCV02.master.dat	Other
	AMCV01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Analysis of Colletotrichum orbiculare infection of N. benthamiana

Project description:Species from the genus Colletotrichum are the causal agents of anthracnose which contribute to significant losses to the production of commercially grown crops. The genomes of Colletotrichum orbiculare, which infects cucurbits and Nicotiana benthamiana, as well as Colletotrichum gloeosporioides, which infects a wide range of fruits and vegetables, were sequenced. A custom microarray was designed for Colletotrichum orbiculare and used to assess gene expression during infection of Nicotiana benthamiana. Gene expression of Colletotrichum orbiculare growing on its host Nicotiana benthamiana was assessed at 24 hours post inoculation, 3 days post inoculation and 7 days post inoculation. Mycelia growing in vitro and ungerminated conidia were used as controls. Three replicates were performed for each time point.

2013-04-09 | GSE39714 | GEO

Colletotrichum orbiculare

Project description:Colletotrichum orbiculare Transcriptome or Gene expression

| PRJNA1184698 | ENA

Colletotrichum orbiculare

Project description:Transcriptome analysis of Colletotrichum orbiculare during host infection

| PRJDB15139 | ENA

Colletotrichum orbiculare

Project description:Analysis of Colletotrichum orbiculare infection of N. benthamiana

| PRJNA171541 | ENA

Colletotrichum orbiculare

Project description:Analysis of Colletotrichum orbiculare whi2Δ mutant infection of Cucumis sativus at 4hpi

| PRJNA296041 | ENA

Colletotrichum orbiculare

Project description:Transcriptome analyses of Colletotrichum orbiculare during appressorium formation in vitro and in planta

| PRJNA304586 | ENA

Colletotrichum zoysiae strain:MAFF 238573

Project description:Colletotrichum zoysiae strain:MAFF 238573 Genome sequencing and assembly

| PRJNA262217 | ENA

RNAseq of Colletotrichum orbiculare on Nicotiana benthamiana

Project description:Time course of C. orbiculare infection of the host plant, N. benthamiana, and comparison to in vitro grown tissue (conidia and in vitro grown hyphae) to identify genes that contribute to the infection process by transcript expression profile.

2021-10-26 | GSE178879 | GEO

Colletotrichum incanum strain:MAFF 238704

Project description:Colletotrichum incanum MAFF 238704 genome sequencing and assembly

| PRJNA286717 | ENA

Analysis of Colletotrichum orbiculare whi2Δ mutant infection of Cucumis sativus at 4hpi

Project description:Colletotrichum orbiculare Whi2, yeast stress response Whi2 homolog, is involved in switch from biotrophic to necrotrophic stage. To elucidate downstream genes regulated by Co Whi2, we have conducted DNA microarray. About 3100 genes were up or down regulated in the Co whi2Δ mutant compared with the wild-type. In particularly, 44 genes among up-regulated 58 genes in the Co whi2Δ mutant are ribosomal protein related gene. Eukaryote is widely conserved TOR (Target Of Rapamycin) which is known to regulator of ribosomal gene expression. To elucidate whether up-regulated ribosomal genes in the Co whi2Δ mutant are regulated by TOR activity, we have conducted DNA microarray in the Co whi2Δ mutant treated with rapamycin inhibiting TOR activity. The enormous ribosomal gene expression in the Co whi2Δ mutant treated with the rapamycin is lower than that without rapamycin treatment.

2016-04-01 | GSE73096 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data