Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mesobuthus martensii

ABSTRACT: Genome Sequencing of Mesobuthus martensii

PROVIDER: PRJNA171479 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR2790072_1.fastq.gz	Fastqsanger.gz
	SRR2790072_2.fastq.gz	Fastqsanger.gz
	SRR2791632_1.fastq.gz	Fastqsanger.gz
	SRR2791632_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Mesobuthus martensii

Project description:Mesobuthus martensii overview

| PRJNA171597 | ENA

Mesobuthus martensii breed:Yimeng scorpion

Project description:Mesobuthus martensii breed:Yimeng scorpion Genome sequencing

| PRJNA577537 | ENA

Mesobuthus martensii breed:Chinese scorpion

Project description:Mesobuthus martensii breed:Chinese scorpion Exome

| PRJNA341817 | ENA

Mesobuthus martensii breed:Chinese scorpion

Project description:Mesobuthus martensii breed:Chinese scorpion Exome

| PRJNA342232 | ENA

Mesobuthus martensii

Project description:Mesobuthus martensii_RNA-seq of different tissues

| PRJNA298268 | ENA

Pinctada martensii

Project description:Pinctada martensii Raw sequence reads

| PRJNA494927 | ENA

The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods.

Project description:Representing a basal branch of arachnids, scorpions are known as 'living fossils' that maintain an ancient anatomy and are adapted to have survived extreme climate changes. Here we report the genome sequence of Mesobuthus martensii, containing 32,016 protein-coding genes, the most among sequenced arthropods. Although M. martensii appears to evolve conservatively, it has a greater gene family turnover than the insects that have undergone diverse morphological and physiological changes, suggesting the decoupling of the molecular and morphological evolution in scorpions. Underlying the long-term adaptation of scorpions is the expansion of the gene families enriched in basic metabolic pathways, signalling pathways, neurotoxins and cytochrome P450, and the different dynamics of expansion between the shared and the scorpion lineage-specific gene families. Genomic and transcriptomic analyses further illustrate the important genetic features associated with prey, nocturnal behaviour, feeding and detoxification. The M. martensii genome reveals a unique adaptation model of arthropods, offering new insights into the genetic bases of the living fossils.

| S-EPMC3826648 | biostudies-literature

The complete mitochondrial DNA sequence of Yimeng scorpion (<i>Mesobuthus martensii</i>).

Project description:Yimeng scorpion is a specific geographical indication breed of Yimeng Mountain area in China. The complete mitochondrial genome sequence of Yimeng scorpion was determined for the first time (Accession number MN597087). It is mitochondrial genome (14,840 bp) contains 13 protein-coding genes, 21tRNA genes, 2 ribosomal RNA genes and one large non-coding region (a possible control region). Moreover, tRNA-ASP-loss was observed from the Yimeng scorpion mitochondrial genome. The mitochondrial genome sequence of the Yimeng scorpion enriches data resource for further research on genetic mechanism and classification.

| S-EPMC7748737 | biostudies-literature

Molecular characterization and expression analysis of CSαβ defensin genes from the scorpion Mesobuthus martensii.

Project description:Defensins are important components of innate host defence system against bacteria, fungi, parasites and viruses. Here, we predicted six potential defensin genes from the genome of the scorpion Mesobuthus martensii and then validated four genes from them via the combination of PCR and genomic sequence analysis. These four scorpion defensin genes share the same gene organization and structure of two exons and one phase-I intron with the GT-AG rule. Conserved motif and phylogenetic analysis showed that they belonged to the members of the invertebrate cysteine-stabilized α-helix/β-sheet motif defensin (CSαβ) defensin family. All these four CSαβ defensin genes have the expression feature of constitutive transcription (CON) by the whole scorpion infection model, promoter sequence analysis and dual luciferase assays. Further evolution and comparison analysis found that the invertebrate CSαβ defensin genes from most of arachnids and mollusks appear to share the expression pattern of CON, but those from insects and lower invertebrates (nematodes, annelids, cnidarians and sponges) seem to have identical inducible transcription (IND) after being challenged by microorganisms. Together, we identified four scorpion CSαβ defensin genes with the expression feature of CON, and characterized the diversified expression patterns of the invertebrate CSαβ defensin genes, which will shed insights into the evolution of the invertebrate CSαβ defensin genes and their expression patterns.

| S-EPMC6435467 | biostudies-literature

Pinctada fucata martensii mantle edge tissue LC-MS/MS

Project description:We have got a yellow shell variety of Pinctada fucata martensii after years of artificial breeding. To identify differentially expressed genes between yellow shell and normal black shell pearl oysters, we performed label-free proteomic analyses by LC-MS using mantle edge tissues.

2019-11-13 | PXD012211 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data