Brachymystax lenok
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA172528 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| Other | ||||
| SRR13961600_1.fastq.gz | Fastqsanger.gz | |||
| SRR13961600_2.fastq.gz | Fastqsanger.gz | |||
| SRR13961601_1.fastq.gz | Fastqsanger.gz | |||
| SRR13961601_2.fastq.gz | Fastqsanger.gz |
Items per page: 5 1 - 5 of 120 |
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Project description:Brachymystax lenok tsinlingensis Metagenomic assembly
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Project description:Brachymystax lenok tsinlingensis Transcriptome or Gene expression
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Project description:Brachymystax lenok tsinlingensis isolate:TLGS_1 Genome sequencing and assembly
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Project description:Brachymystax lenok tsinlingensis isolate:SNNU-2019-QLXLG Genome sequencing and assembly
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Project description:In order to provide new insights into the physiological responses of lenok (Brachymystax lenok: Salmonidae) to acute and severe heat stress (25°C, 48 h), dynamic changes in redox state and metabolic responses are studied combined biochemical index and non-targeted metabolome. Nicotinamide adenine dinucleotide (NAD+) consumption causes significant increases in ratio of reduced NADH to NAD+ and ratio of reduced nicotinamide adenine dinucleotide phosphate (NADPH) to NADP+, which induced the redox imbalance in heat stressed lenok. Lowered reduced glutathione/oxidized glutathione (GSH/GSSG) ratios suggested that more oxidized conditions occurred in heat-stressed lenok, leading to membrane lipid oxidation. The first few hours of heat stress promoted the activity of enzymes involved in anaerobic glycolysis (hexokinase, pyruvate kinase, lactic dehydrogenase) and glutamicpyruvic transaminase and glutamic oxaloacetic transaminase, which might lead to consumption of many carbohydrates and amino acid catabolism. These enzyme activities decreased with time in a possible compensatory strategy to manage anabolic and catabolic metabolism, maintaining the redox homeostasis. After 48 h of recovery, NAD+, carbohydrate levels and enzyme activities had returned to control levels, whereas many amino acids were consumed for repair and new synthesis. GSH remained at levels lower than controls, and the more oxidized conditions had not recovered, aggravating oxidative damage. Glutamic acid, glutamine, lysine and arginine may play important roles in survival of heat-stressed lenok.
| S-EPMC10244579 | biostudies-literature
Project description:BACKGROUND:Broad-scale phylogeographic studies of freshwater organisms provide not only an invaluable framework for understanding the evolutionary history of species, but also a genetic imprint of the paleo-hydrological dynamics stemming from climatic change. Few such studies have been carried out in Siberia, a vast region over which the extent of Pleistocene glaciation is still disputed. Brachymystax lenok is a salmonid fish distributed throughout Siberia, exhibiting two forms hypothesized to have undergone extensive range expansion, genetic exchange, and multiple speciation. A comprehensive phylogeographic investigation should clarify these hypotheses as well as provide insights on Siberia's paleo-hydrological stability. RESULTS:Molecular-sequence (mtDNA) based phylogenetic and morphological analysis of Brachymystax throughout Siberia support that sharp- and blunt-snouted lenok are independent evolutionary lineages, with the majority of their variation distributed among major river basins. Their evolutionary independence was further supported through the analysis of 11 microsatellite loci in three areas of sympatry, which revealed little to no evidence of introgression. Phylogeographic structure reflects climatic limitations, especially for blunt-snouted lenok above 56 degrees N during one or more glacial maxima. Presumed glacial refugia as well as interbasin exchange were not congruent for the two lineages, perhaps reflecting differing dispersal abilities and response to climatic change. Inferred demographic expansions were dated earlier than the Last Glacial Maximum (LGM). Evidence for repeated trans-basin exchange was especially clear between the Amur and Lena catchments. Divergence of sharp-snouted lenok in the Selenga-Baikal catchment may correspond to the isolation of Lake Baikal in the mid-Pleistocene, while older isolation events are apparent for blunt-snouted lenok in the extreme east and sharp-snouted lenok in the extreme west of their respective distributions. CONCLUSION:Sharp- and blunt-snouted lenok have apparently undergone a long, independent, and demographically dynamic evolutionary history in Siberia, supporting their recognition as two good biological species. Considering the timing and extent of expansions and trans-basin dispersal, it is doubtful that these historical dynamics could have been generated without major rearrangements in the paleo-hydrological network, stemming from the formation and melting of large-scale glacial complexes much older than the LGM.
| S-EPMC2275220 | biostudies-literature
Project description:Brachymystax lenok tsinlingensis is an endangered freshwater fish which is endemic to part of China. To investigate its genetic diversity and population structure, mitochondrial cytochrome b gene and D-loop control region were used to analyze samples from five different locations. Fifteen haplotypes were identified; however, no shared haplotypes were observed among different streams. The analysis of molecular variance (AMOVA) results indicated that 77.38% of total variation was attributed to differentiation between populations, whereas 22.62% from variation within populations. The high genetic differentiation among the populations would provide useful information for building natural reserves and artificially releasing cultured juveniles in the future.
| S-EPMC7800879 | biostudies-literature