Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gallus gallus strain:white leghorn

ABSTRACT: Gallus gallus Oviduct Transcriptome

PROVIDER: PRJNA173328 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR546478_1.fastq.gz	Fastqsanger.gz
	SRR546478_2.fastq.gz	Fastqsanger.gz
	SRR546487_1.fastq.gz	Fastqsanger.gz
	SRR546487_2.fastq.gz	Fastqsanger.gz
	SRR546492_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Gallus gallus white isthmus transcriptome

Project description:The Del-Mar 14K chip was used to interrogate differential expression of transcripts in the white isthmus (WI) compared with the adjacent magnum (Mg) and uterine (Ut) segments of the hen oviduct. Differential expression of genes common to both comparisons (WI/Mg and WI/Ut) was detected for 204 annotated proteins. Of these, 58 genes were overexpressed in both WI/Mg and WI/Ut, and are therefore considered to be the most interesting candidates for WI - specific functions. Additionally, general analysis revealed 135 clones hybridizing to overexpressed transcripts (WI/Mg + WI/Ut), and corresponding to 102 NCBI annotatated non-redundant Gallus gallus gene ID~s. This combined analysis revealed that structural proteins highly over-expressed in white isthmus were collagen X (COL10A1), Fibrillin (FBN1) and Cysteine Rich Eggshell Membrane Protein (CREMP). In addition, genes encoding collagen-processing enzymes were over-expressed, as were proteins known to regulate disulfide cross-linking, suggesting that coordinated upregulation of gene networks in the white isthmus is associated with eggshell membrane fibre formation. IPA interactome analysis reinforces the key role of the estrogen receptor and SMAD3 in mediating gene regulation during eggshell membrane synthesis. These results will assist with development of selection strategies to improve eggshell quality and food safety of the table egg. Keywords: Laying hen, eggshell, oviduct, Isthmus expression, cDNA microarray, indirect cDNA labelling, Alexa Fluor dyes Keywords: Expression profiling by array

2013-12-01 | GSE52491 | GEO

Gallus gallus breed:White Leghorn

Project description:Gallus gallus breed:White Leghorn Transcriptome or Gene expression

| PRJNA392373 | ENA

Gallus gallus breed:White Leghorn

Project description:Gallus gallus breed:White Leghorn Transcriptome or Gene expression

| PRJNA276962 | ENA

Gallus gallus white isthmus transcriptome

2013-12-01 | E-GEOD-52491 | biostudies-arrayexpress

Gallus gallus breed:White Leghorn

Project description:Gallus gallus breed:White Leghorn Genome sequencing

| PRJNA772890 | ENA