Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Homo sapiens strain:(ITU) Indian Telugu in the UK

ABSTRACT: Exome sequencing of (ITU) Indian Telugu in the UK HapMap population

PROVIDER: PRJNA173706 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR250731_1.fastq.gz	Fastqsanger.gz
	ERR250731_2.fastq.gz	Fastqsanger.gz
	ERR250732_1.fastq.gz	Fastqsanger.gz
	ERR250732_2.fastq.gz	Fastqsanger.gz
	ERR250739_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 302

Similar Datasets

Homo sapiens strain:(ITU) Indian Telugu in the UK

Project description:Whole genome sequencing of (ITU) Indian Telugu in the UK HapMap population

| PRJNA173700 | ENA

Homo sapiens strain:(ITU) Indian Telugu in the UK

Project description:Exome sequencing of (ITU) Indian Telugu in the UK HapMap population. DNA for sequencing was extracted from whole blood

| PRJNA177426 | ENA

Homo sapiens strain:(ITU) Indian Telugu in the UK

Project description:Whole genome sequencing of (ITU) Indian Telugu in the UK HapMap population. DNA for sequencing was extracted from whole blood

| PRJNA177421 | ENA

Homo sapiens strain:(STU) Sri Lankan Tamil in the UK

Project description:Whole genome sequencing of (ITU) Indian Telugu in the UK HapMap population. DNA for sequencing was extracted from whole blood

| PRJNA177419 | ENA

Homo sapiens strain:(STU) Sri Lankan Tamil in the UK

Project description:Exome sequencing of (STU) Sri Lankan Tamil in the UK HapMap population

| PRJNA173705 | ENA

TMC-SNPdb: An Indian germline variant dataset derived from whole exome sequence

Project description:Cancer is predominantly a somatic disease. A mutant allele found in cancer cell genome is considered somatic when it is absent in paired normal genome and dbSNP, the most comprehensive public SNP database. However, dbSNP inadequately represents several non-Caucasian populations including that from the Indian subcontinent, posing a limitation in cancer genomic analyses of data from these populations. We present TMC-SNPdb, as the first open source freely accessible (through ANNOVAR), flexible and upgradable SNP database from whole exome data of 62 normal samples derived from cancer patients of Indian origin, representing 114,309 unique germline variants. TMC-SNPdb is presented with a companion subtraction tool that can be executed with command line option or an easy-to-use graphical user interface (GUI) with the ability to deplete additional Indian population specific SNPs over and above that possible with dbSNP and 1000 Genomes databases. Using an institutional generated whole exome data set of 132 samples of Indian origin, we demonstrate that TMC-SNPdb reduced 42%, 33% and 28% false positive somatic events post dbSNP depletion in Indian origin tongue, gallbladder, and cervical cancer samples, respectively. Beyond cancer somatic analyses, we anticipate utility of TMC-SNPdb in several Mendelian germline diseases.

2018-06-06 | E-MTAB-4618 | biostudies-arrayexpress

Whole exome sequencing of Lung Squamous Carcinoma Patients of Indian Origin

Project description:The study involves whole exome sequencing of 20 primary tumors obtained from lung squamous carcinoma patients of Indian origin. With this, we aim to describe the mutational profile of this specific subset of lung cancer patients. This knowledge will further allow us to gain an insight into potentially actionable genomic alterations prevalent in Indian lung squamous carcinoma.

2022-02-11 | E-MTAB-8801 | biostudies-arrayexpress

Homo sapiens strain:(STU) Sri Lankan Tamil in the UK

Project description:Whole genome sequencing of (STU) Sri Lankan Tamil in the UK HapMap population

| PRJNA173699 | ENA

Homo sapiens isolate:HG03719

Project description:Homo sapiens HG03719, Indian Telugu in the UK, Genome sequencing and assembly

| PRJNA587728 | ENA

Homo sapiens strain:(STU) Sri Lankan Tamil in the UK

Project description:Exome sequencing of (STU) Sri Lankan Tamil in the UK HapMap population. DNA for sequencing was extracted from whole blood

| PRJNA177427 | ENA