Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fossil metagenome

ABSTRACT: Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA.

PROVIDER: PRJNA17621 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR257734.fastq.gz	Fastqsanger.gz
	SRR9439466.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing

Project description:5′ methylation of cytosines in DNA molecules is an important epigenetic mark in eukaryotes. Bisulfite sequencing is the gold standard of DNA methylation detection, and whole-genome bisulfite sequencing (WGBS) has been widely used to detect methylation at single-nucleotide resolution on a genome-wide scale. However, sodium bisulfite is known to severely degrade DNA, which, in combination with biases introduced during PCR amplification, leads to unbalanced base representation in the final sequencing libraries. Enzymatic conversion of unmethylated cytosines to uracils can achieve the same end product for sequencing as does bisulfite treatment and does not affect the integrity of the DNA; enzymatic methylation sequencing may, thus, provide advantages over bisulfite sequencing.

2020-10-07 | GSE151616 | GEO

fossil metagenome

Project description:Ancient Ostrich Eggshell Raw sequence reads

| PRJNA314978 | ENA

fossil metagenome

Project description:Bacteria of ancient elephant teeth Raw sequence reads

| PRJNA1041588 | ENA

fossil metagenome

Project description:Shotgun ancient DNA metagenome, tooth, Black Death victim #8291

| PRJNA239147 | ENA

fossil metagenome

Project description:Shotgun ancient DNA metagenome, intestine specimen, cholera victim #3090.13

| PRJNA239173 | ENA

fossil metagenome

Project description:Ancient DNA reveals multiple origins and migration waves of extinct Japanese brown bear lineages

| PRJDB8832 | ENA

Gobiocypris rarus

Project description:Large-scale regional biodiversity patterns and life strategies

| PRJNA1066579 | ENA

Project description:Allocating extrachromosomal DNA amplification from large-scale cancer sequencing dataset

| PRJNA894840 | ENA

ATAC-seq analyses by using Tn5 transposome assembled with IEOE19 adaptor DNAs

Project description:To investigate the specificity of the Tn5 transposome with short adaptor DNAs under the non-crosslinked condition, we conducted ATAC-seq using alternative 19 bp adaptor DNAs (IE and OE) harboring 7 nucleotide differences between them (Maggie.JMB.1998), which allowed for specific PCR amplification without losing the superior enzymatic activity.

2022-05-01 | GSE144449 | GEO

Controlled library preparation of STR-bearing minigenes at three amplification time-points

Project description:We have designed a method for direct measurement of in vitro noise. Using a synthetic STR sequencing library, we have measured the stutter patterns at various levels of PCR amplification during targeted amplification and library preparation processes

2019-01-26 | E-MTAB-7602 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data