Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana

ABSTRACT: A Role for the RNA-Binding Protein MOS2 in MicroRNA Maturation in Arabidopsis

PROVIDER: PRJNA178309 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR609267.fastq.gz	Fastqsanger.gz
	SRR609268.fastq.gz	Fastqsanger.gz
	SRR609269.fastq.gz	Fastqsanger.gz
	SRR609270.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Arabidopsis thaliana

Project description:DELAY OF GERMINATION 1 plays a role in Arabidopsis seed maturation

| PRJNA274129 | ENA

Arabidopsis thaliana

Project description:Genome wide binding sites of the Arabidopsis B3 domain protein FUSCA3

| PRJNA185307 | ENA

Arabidopsis thaliana

Project description:Polycomb Binding Protein

| PRJNA97053 | ENA

Arabidopsis thaliana

Project description:Role of the SPIRRIG protein in Arabidopsis thaliana salt stress response

| PRJNA278120 | ENA

Arabidopsis thaliana

Project description:Double-stranded RNA-binding protein DRB3 negatively regulates anthocyanin biosynthesis by modulating PAP1 expression in Arabidopsis thaliana

| PRJDB5125 | ENA

Arabidopsis thaliana and Arabidopsis lyrata degradomes

Project description:Deep sequencing of the 5' ends of uncapped, polyA-enriched mRNA from two biological replicate samples from Arabidopsis thaliana inflorescences, as well as two biological replicates of Arabidopsis lyrata inflorescences. These data were used to experimentally identify sliced microRNA targets from the two species.

2010-04-22 | GSE20451 | GEO

Mass spectrometry data for RNA-binding proteins in Arabidopsis thaliana

Project description:This contains raw Mass-spec data of the RNA-binding proteins from Arabidopsis using both Plant Phase Extraction (PPE) and mRNA-interactome capture (RIC).

2023-04-11 | MSV000091682 | MassIVE

Distinct characteristics of Arabidopsis thaliana circular RNAs

Project description:In all living organisms, regulation of gene expression is fundamental for survival and adaptation. Gene expression can be modulated at various steps, including at the level of RNA processing. During the last few years, the importance of alternative splicing of mRNAs in controlling plant development and stress responses were emerged and highlighted its importance. Recently, an other type of alternative splicing has been reported which leads to the generation of circular RNAs (circRNAs), a novel class on endogenous noncoding RNAs. Several functions of circular RNAs have been proven or proposed, including functioning as microRNA or RNA-binding protein decoys, playing regulatory roles in gene expression or affecting transcriptional control via special RNA-RNA interactions. Despite the widening knowledge of circRNAs and their functional aspects in the animal kingdom, relatively little is known about circRNAs in plants. In order to detect and classify circRNAs in Arabidopsis thaliana, we created a workflow that includes generation of Illumina libraries enriched for circRNAs and a comparison of biocomputational tools developed for detecting endogenous circular RNAs in other species. With the power of high-throughput sequencing and evaluation of algorithms, high-fidelity candidates were subjected for an analysis of their functional role in plant development and stress-related responses, especially regarding the role of splicing, including alternative splicing events, splice site preference and strength variances and transcript composition and to comprehend the role of RNA processing in stress response. Here we present an approach combining bioinformatic tools and molecular techniques to investigate the adaptability of detection methods of circRNAs from other species to plant circular RNAs, and based on our high-fidelity results identify and understand the characteristics of circRNAs in Arabidopsis thaliana.

2019-01-24 | GSE125378 | GEO

Arabidopsis thaliana

Project description:Gene expression during Arabidopsis flower maturation

| PRJNA147409 | ENA

Arabidopsis thaliana

Project description:BAF60 binding sites and their role in Modulating DNA accessibility in Arabidopsis thaliana

| PRJNA351855 | ENA