Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Paenibacillus sp. PAMC 26794

ABSTRACT: Genome sequencing of humic substances-degrading bacterium

PROVIDER: PRJNA179328 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ANHX01.dat.gz	Other
	ANHX01.fasta.gz	Fasta.gz
	ANHX01.master.dat	Other
	ANHX01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Pseudomonas sp. PAMC 29040

Project description:Study for bacterial lignin & humic substances-decomposition

| PRJNA510887 | ENA

Pseudomonas sp. PAMC 26793

Project description:Draft genome sequence of a subarctic humic substance-degrading pseudomonad: Gene discovery for degradation process

| PRJNA176955 | ENA

Transcriptional characterization of maize roots in response to nitrate (NO3-), Water-Extractable Humic Substances (WEHS) and NO3-+WEHS.

Project description:Soil humic substances are known to positively influence plant growth and nutrition. In particular, low-molecular fractions have been shown to increase NO3- uptake and PM H+-ATPase activity and alter expression of related genes. Changes in maize root transcriptome due to treatment with nitrate (NO3-), Water-Extractable Humic Substances (WEHS) and NO3-+WEHS were analyzed.

2018-07-30 | GSE103184 | GEO

Paenibacillus sp. JDR-2

Project description:Hemicellulose-degrading bacterium

| PRJNA20399 | ENA

Proteomic analysis of the papaverine degrading Arthrobacter sp.

Project description:In previous work in our group, shotgun genome sequencing of Arthrobacter sp. revealed potential new P450 monooxygenases and many other oxidoreductases with putative hydroxylation activity. A targeted approach to identify enzymes involved in the degradation of certain molecules is proteomic analysis. In the case of growth on certain substances, enzymes like P450s, which are responsible for the observed organism’s capabilities, might be overexpressed or initially induced.

2019-02-19 | PXD009566 | Pride

EVALUATION OF THE EFFECTS OF HUMIC ACIDS ON MAIZE ROOT ARCHITECTURE BY LABEL-FREE PROTEOMICS ANALYSIS

Project description:Humic substances have been widely used as plant growth promoters to improve the yield of agricultural crops. Root soluble protein profiles of 11 days after planting, cultivated with and without humic acids (50 mg C/L), were analysed using the label-free quantitative proteomic approach. The effects on root architecture, such as induction of lateral root and biomass increase were accompanied by changes in the proteins.

2019-11-12 | PXD014407 | Pride

Transcriptome analysis of Novosphingobium sp. THN1 during microcystin-LR degradation under different carbon concentrations

Project description:The bacterium Novosphingobium sp. THN1 (THN1) is capable of degrading microcystin-LR (MCLR). To get an insight into genes expression during MCLR degradation and the regulation of different carbon concentrations on MCLR degradation, we performed RNA-seq of THN1 during MCLR degradation under different carbon concentrations.

2019-01-30 | GSE125827 | GEO

Microarray analysis of humic acid extract effects on Triticum aestivum growth

Project description:Humic substances are principal components of soil organic matter. They have ecological importance as they intervene in regulating a large number of chemical and biological processes that occur in natural ecosystems. Their ability to improve plant growth has been well established in diverse plant species and growth conditions, although the mechanism responsible for this biological action is poorly understood. Microarray analysis might give us more information about up or down regulation of different biological processes. Wheat plants have been grown hydroponically and treated with Humic acid. Seeds were germinated in obscurity during 10 days, and grown in nutrient solution during 10 days. Harvests were conducted 24 hours, 72 hours and 30 days after treatment application, in order to study early response or a more sustained effect during time.

2022-01-28 | E-MTAB-11280 | biostudies-arrayexpress

Paenibacillus sp. GKG secreted proteins LC-MSMS

Project description:The advances of next-generation sequencing technologies enabled the continuous growth in the number of gene sequences deposited into the CAZy database, meanwhile, the number of biochemically characterized CAZymes is growing at a much slower rate. The biochemical characterization of discovered enzymes is important because of the industrially relevant properties such as high thermal stability or cold-adaptivity that these enzymes may possess. The aim of our project is to screen for up-to-date biochemically uncharacterized CAZymes. We screen for microorganisms that are able to produce extracellular CAZymes. We use LC-MSMS proteomics to identify extracellular enzymes produced by the selected microorganisms.

2022-10-20 | PXD036565 | Pride

Paenibacillus xylanexedens strain:PAMC 22703 | isolate:PAMC 22703

Project description:Paenibacillus xylanexedens PAMC 22703 genome sequencing

| PRJNA712058 | ENA