Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Herbaspirillum hiltneri

ABSTRACT: Herbaspirillum hiltneri overview

PROVIDER: PRJNA182198 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR10151408_1.fastq.gz	Fastqsanger.gz
	SRR10151408_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Herbaspirillum chlorophenolicum

Project description:Herbaspirillum chlorophenolicum overview

| PRJNA287729 | ENA

Herbaspirillum lusitanum

Project description:Herbaspirillum lusitanum overview

| PRJNA91069 | ENA

Herbaspirillum frisingense

Project description:Herbaspirillum frisingense overview

| PRJNA51271 | ENA

Herbaspirillum aquaticum

Project description:Herbaspirillum aquaticum overview

| PRJNA641476 | ENA

Herbaspirillum huttiense

Project description:Herbaspirillum huttiense overview

| PRJNA176090 | ENA

Herbaspirillum rubrisubalbicans

Project description:Herbaspirillum rubrisubalbicans overview

| PRJNA72607 | ENA

Herbaspirillum seropedicae transcript profile on maize rhizosphere

Project description:Herbaspirillum seropedicae is a Betaproteobacterium capable of colonizing epiphytically and endophytically commercial grasses, promoting plant growth. In this study, we utilized RNA-seq to compare the transcriptional profiles of planktonic and maize root-attached H. seropedicae SmR1.

2015-02-28 | E-MTAB-3026 | biostudies-arrayexpress

Transcriptome profile of Herbaspirillum seropedicae SmR1 grown in the presence of aromatic compounds

Project description:Herbaspirillum seropedicae SmR1 was grown in NFbHPN medium until OD600nm of 0.6, when 5mM phenol or 2,5mM benzoic acid was added to the medium. After 30 minutes of growth, the cells were collected by centrifugation and total RNA was extracted with RiboPureBacteria. Also, a derivative strain from Herbaspirillum seropedicae SmR1 resistant to 1mM phenol (named strain RP) was grown in NFbHPN medium containing 1mM phenol until OD600nm of 0.6, then 5mM phenol was added to the medium. After 30 minutes of growth, the cells were collected by centrifugation and total RNA was extracted with RiboPureBacteria. All samples were depleted for ribossomal RNA e sequenced with Solid plataform.

2016-04-01 | E-MTAB-3467 | biostudies-arrayexpress

Herbaspirillum sp.

Project description:Herbaspirillum sp. Genome sequencing and assembly

| PRJNA1109581 | ENA

Genome wide transcriptional profiling of Herbaspirillum seropedicae SmR1 grown in the presence of naringenin

Project description:Herbaspirillum seropedicae is a diazotrophic bacterium which associates endophytically with economically important gramineae. Flavonoids such as naringenin, have been shown to have an effect on the interaction between H. seropedicae and its host plants. We used a high-throughput sequencing based method (RNA-Seq) to access the influence of naringenin on the whole transcriptome profile of H. seropedicae.

2015-04-30 | E-MTAB-3435 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data