Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hemibagrus macropterus

ABSTRACT: Hemibagrus macropterus overview

PROVIDER: PRJNA182845 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25905044_1.fastq.gz	Fastqsanger.gz
	SRR25905044_2.fastq.gz	Fastqsanger.gz
	SRR25905045_1.fastq.gz	Fastqsanger.gz
	SRR25905045_2.fastq.gz	Fastqsanger.gz
	SRR25905046_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Hemibagrus macropterus

Project description:Hemibagrus macropterus Transcriptome sequencing

| PRJNA1012460 | ENA

Hemibagrus macropterus

Project description:Hemibagrus macropterus Raw sequence reads

| PRJNA1012452 | ENA

Pagetopsis macropterus

Project description:Pagetopsis macropterus overview

| PRJNA843840 | ENA

Hemibagrus nemurus

Project description:Hemibagrus nemurus overview

| PRJNA574500 | ENA

Hemibagrus guttatus

Project description:Hemibagrus guttatus overview

| PRJNA758460 | ENA

Hemibagrus wyckioides

Project description:Hemibagrus wyckioides overview

| PRJNA606630 | ENA

Paraliparis macropterus

Project description:Paraliparis macropterus

| PRJNA1198569 | ENA

Chromosome-level genome assembly of the largefin longbarbel catfish (<i>Hemibagrus macropterus</i>).

Project description:The largefin longbarbel catfish, Hemibagrus macropterus, is an economically important fish species in southwestern China, with males growing faster than females. This study presents a high-quality chromosome-level genome assembly of the largefin longbarbel catfish, generated by integrating Illumina short reads, PacBio HiFi long reads, and Hi-C data. The assembled genome size was 858.5 Mb, with a contig and scaffold N50 of 5.8 Mb and 28.4 Mb, respectively. A total of 656 contigs were successfully anchored to 30 pseudochromosomes with a BUSCO score of 97.7%, consistent with the number of chromosomes analyzed by karyotype. The genome contained 29.5% repeat sequences, and a predicted total of 26,613 protein-coding genes, of which 25,769 (96.8%) were functionally annotated in different databases. Evolutionary analysis showed that H. macropterus was most closely related to H. wyckioides, with a divergence time of approximately 16.3 million years. Chromosomal syntenic relationships among H. macropterus, H. wyckioides, and Pelteobagrus fulvidraco revealed a one-to-one relationship for most chromosomes, except for break, fission, and inversion of some chromosomes. The first high-quality reference genome will not only provide a valuable genetic resource for the study of sex determination mechanisms and genetic breeding of largefin longbarbel catfish, but also contribute to comparative analyses of genome and chromosome evolution within Siluriformes.

| S-EPMC10646426 | biostudies-literature

Hemibagrus guttatus

Project description:Hemibagrus guttatus Raw sequence reads

| PRJNA1186751 | ENA

Hemibagrus wyckioides

Project description:Hemibagrus wyckioides Raw sequence reads

| PRJNA895217 | ENA