Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Phytophthora lateralis strain:SMSTG

ABSTRACT: Phytophthora lateralis strain:SMSTG Genome sequencing and assembly

PROVIDER: PRJNA184360 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR639371_1.fastq.gz	Fastqsanger.gz
	SRR639371_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Phytophthora lateralis

Project description:Phytophthora lateralis overview

| PRJNA177645 | ENA

Phytophthora lateralis MPF4

Project description:Phytophthora lateralis MPF4 Genome sequencing and assembly

| PRJNA177508 | ENA

Phytophthora lateralis SMST21

Project description:Phytophthora lateralis SMST21 Genome sequencing and assembly

| PRJNA178938 | ENA

Phytophthora lateralis MPF6

Project description:Phytophthora lateralis MPF6 Genome sequencing and assembly

| PRJNA178937 | ENA

Phytophthora lateralis strain:CBS 168.42

Project description:Phytophthora lateralis strain:CBS 168.42 Genome sequencing and assembly

| PRJNA190827 | ENA

ChIP-seq of phytophthora sojae P6497

Project description:Centromeres are chromosomal regions that serve as platforms for kinetochore assembly and spindle attachments, ensuring accurate chromosome segregation during cell division. Despite functional conservation, centromeric sequences are diverse and usually repetitive across species, making them challenging to assemble and identify. Here, we describe centromeres in the model oomycete Phytophthora sojae by combining long-read sequencing-based genome assembly and chromatin immunoprecipitation for the centromeric histone CENP-A followed by high-throughput sequencing (ChIP-seq). P. sojae centromeres cluster at a single focus in the nucleus at different life stages and during nuclear division. We report a highly contiguous genome assembly of the P. sojae reference strain, which enabled identification of 15 highly enriched CENP-A binding regions as putative centromeres. By focusing on 10 intact regions, we demonstrate that centromeres in P. sojae are regional, spanning 211 to 356 kb. Most of these regions are transposon-rich, poorly transcribed, and lack the euchromatin mark H3K4me2 but are embedded within regions with the heterochromatin marks H3K9me3 and H3K27me3.

2020-01-07 | GSE143137 | GEO

Characodon lateralis strain:CL_MEX2019

Project description:Characodon lateralis strain:CL_MEX2019 Genome sequencing and assembly

| PRJNA734774 | ENA

Sciocoris lateralis

Project description:Sciocoris lateralis Genome sequencing and assembly

| PRJNA886612 | ENA

Masticophis lateralis

Project description:Masticophis lateralis Genome sequencing and assembly

| PRJNA1006778 | ENA

Phytophthora cinnamomi strain:ST402 | breed:Phytophthora

Project description:Phytophthora cinnamomi strain:ST402 | breed:Phytophthora Genome sequencing and assembly