Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Chryseobacterium shigense

ABSTRACT: Chryseobacterium shigense overview

PROVIDER: PRJNA184648 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR12415950_1.fastq.gz	Fastqsanger.gz
	SRR12415950_2.fastq.gz	Fastqsanger.gz
	SRR12415465_1.fastq.gz	Fastqsanger.gz
	SRR12415465_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

Chryseobacterium shigense PCAi_B23

Project description:Chryseobacterium shigense PCAi_B23 genome sequence

| PRJEB339 | ENA

Chryseobacterium shigense strain:S00064

Project description:Chryseobacterium shigense S00064 genome sequencing

| PRJNA632085 | ENA

Chryseobacterium shigense strain:DSM 17126 | isolate:DSM 17126

Project description:Chryseobacterium shigense DSM 17126 genome sequencing

| PRJNA330501 | ENA

Chryseobacterium shigense strain:S00136

Project description:Chryseobacterium shingense S00136 genome sequencing

| PRJNA632099 | ENA

Analysis of differential gene expression in the degradation of doxycycline by Chryseobacterium sp. WX1

Project description:We isolated an efficient doxycycline degrading strain Chryseobacterium sp. WX1. To investigate gene expression patterns during doxycyclinedegradation by strain WX1, we conducted a comparative transcriptomic analysis using cultures of strain WX1 with and without doxycycline addition. The RNA-Seq data revealed that 90.44-96.56% of the reads mapped to the genome of Chryseobacterium sp. WX1 across all samples. Differentially expressed genes (DEGs) analysis (|log2FC| >2; p < 0.01) showed that 693 genes were significantly up-regulated and 592 genes were significantly down-regulated.

2023-09-12 | GSE242785 | GEO

First isolation and characterization of Chryseobacterium shigense from rainbow trout.

Project description:BACKGROUND: There have been an increasing number of infections in fish associated with different species of Chryseobacterium, being considered potentially emerging pathogens. Nevertheless the knowledge of the diversity of species associated with fish disease is partial due to the problems for a correct identification at the species level based exclusively on phenotypic laboratory methods. RESULTS: Chryseobacterium shigense was isolated from the liver, kidney and gills of diseased rainbow trout in different disease episodes that occurred in a fish farm between May 2008 and June 2009. Identity of the isolates was confirmed by 16 S rRNA gene sequencing and phenotypic characterization. Isolates represented a single strain as determined by random amplified polymorphic DNA analysis. CONCLUSIONS: This is the first description of the recovery of C. shigense from clinical specimens in trout, a very different habitat to fresh lactic acid beverage where it was initially isolated.

| S-EPMC3426477 | biostudies-literature

Proteomic data on the biodegradation of doxycycline by Chryseobacterium sp. WX1

Project description:In this study, we isolated a potent doxycycline-degrading bacterium, Chryseobacterium sp. WX1, from environmental samples. To elucidate the molecular mechanisms underlying doxycycline degradation by strain WX1, we assessed and interpreted the proteomic profiles of Chryseobacterium sp. WX1 under conditions both with and without doxycycline exposure.

2023-09-07 | PXD045182 | Pride

Project description:Chryseobacterium shigense DSM 17126

| PRJEB18816 | ENA

Chryseobacterium gambrini

Project description:Chryseobacterium gambrini overview

| PRJNA789368 | ENA

Chryseobacterium rhizosphaerae

Project description:Chryseobacterium rhizosphaerae overview

| PRJNA478613 | ENA