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Alloprevotella rava

ABSTRACT: Alloprevotella rava overview

PROVIDER: PRJNA186878 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
		Other
	SRR034535.fastq.gz	Fastqsanger.gz
	SRR035441.fastq.gz	Fastqsanger.gz
	SRR10917495_1.fastq.gz	Fastqsanger.gz
	SRR10917495_2.fastq.gz	Fastqsanger.gz

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Alloprevotella rava strain:DSM 22548 | isolate:DSM 22548

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Alloprevotella tannerae

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Alloprevotella sp. oral taxon 473

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Description of Alloprevotella rava gen. nov., sp. nov., isolated from the human oral cavity, and reclassification of Prevotella tannerae Moore et al. 1994 as Alloprevotella tannerae gen. nov., comb. nov.

Project description:Five strains of anaerobic, gram-negative bacilli isolated from the human oral cavity were subjected to a comprehensive range of phenotypic and genotypic tests and were found to comprise a homogeneous group. Phylogenetic analysis of full-length 16S rRNA gene sequences showed that these strains represented a novel group within the family Prevotellaceae, and the most closely related species was Prevotella tannerae. P. tannerae and the novel taxon are deeply branched from the genus Prevotella, with sequence identities to the type strain of the type species of Prevotella, Prevotella melaninogenica, of 82.2 and 85.6?%, respectively. The novel genus Alloprevotella gen. nov. is proposed to accommodate the novel species Alloprevotella rava gen. nov., sp. nov. and the previously named Prevotella tannerae Moore et al. 1994 as Alloprevotella tannerae gen. nov., comb. nov. The type species is Alloprevotella tannerae. The type strain of Alloprevotella rava is 81/4-12(T) (?=?DSM 22548(T) ?=?CCUG 58091(T)) and the type strain of Alloprevotella tannerae is ATCC 51259(T) ?=?CCUG 34292(T) ?=?CIP 104476(T) ?=?NCTC 13073(T). Alloprevotella rava is weakly to moderately saccharolytic and produces moderate amounts of acetic acid and major amounts of succinic acid as end products of fermentation. Strains are sensitive to 20?% bile and hydrolyse gelatin. The principal cellular long-chain fatty acids are anteiso-C15?:?0, iso-C15?:?0, C16?:?0, iso-C17?:?0 and iso-C17?:?0 3-OH. The G+C content of the DNA of the type strain is 47 mol%.

| S-EPMC3709537 | biostudies-literature

Alloprevotella rava F0323

Project description:Reference Genome for Human Microbiome Project

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Project description:Alloprevotella tannerae strains in human oral cavity

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Alloprevotella tannerae ATCC 51259

Project description:Reference genome for the Human Microbiome Project

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Machine Learning Data Analysis Highlights the Role of <i>Parasutterella</i> and <i>Alloprevotella</i> in Autism Spectrum Disorders.

Project description:In recent years, the involvement of the gut microbiota in disease and health has been investigated by sequencing the 16S gene from fecal samples. Dysbiotic gut microbiota was also observed in Autism Spectrum Disorder (ASD), a neurodevelopmental disorder characterized by gastrointestinal symptoms. However, despite the relevant number of studies, it is still difficult to identify a typical dysbiotic profile in ASD patients. The discrepancies among these studies are due to technical factors (i.e., experimental procedures) and external parameters (i.e., dietary habits). In this paper, we collected 959 samples from eight available projects (540 ASD and 419 Healthy Controls, HC) and reduced the observed bias among studies. Then, we applied a Machine Learning (ML) approach to create a predictor able to discriminate between ASD and HC. We tested and optimized three algorithms: Random Forest, Support Vector Machine and Gradient Boosting Machine. All three algorithms confirmed the importance of five different genera, including Parasutterella and Alloprevotella. Furthermore, our results show that ML algorithms could identify common taxonomic features by comparing datasets obtained from countries characterized by latent confounding variables.

| S-EPMC9405825 | biostudies-literature

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