Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Xenopus tropicalis

ABSTRACT: A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development

PROVIDER: PRJNA186932 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR651117.fastq.gz	Fastqsanger.gz
	SRR651118.fastq.gz	Fastqsanger.gz
	SRR651119.fastq.gz	Fastqsanger.gz
	SRR651120.fastq.gz	Fastqsanger.gz
	SRR651121.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Transcription profiling of Xenopus tropicalis oocytes during maturation and early cleavage stages to identify post-transcriptionally regulated Xenopus tropicalis maternal mRNAs

Project description:Determine the adenylation state of maternal mRNAs during oocyte maturation and early cleavage stages of the xenopus tropicalis embryos

2007-09-30 | E-MEXP-1236 | biostudies-arrayexpress

Deep sequencing of small RNAs in the Xenopus tropicalis gastrula

Project description:Transposable elements comprise a large proportion of animal genomes. Transcripts of transposable elements are a source for the synthesis of endogenous siRNAs and piRNAs. In order to determine if small RNAs mapped to expressed Tc1-like elements are present during early Xenopus tropicalis development, we used Illumina (Solexa) to sequence small RNAs from gastrula-stage embryos. We obtained about 17 million reads that mapped perfectly to the genome. Small RNAs mapped to selected transposable elements were characterized and the expression of selected small RNAs was experimentally verified during development. This is the first deep sequencing experiment for small RNAs in the Xenopus tropicalis gastrula. Analysis of small RNAs expressed in the Xenopus tropicalis gastrula.

2011-06-18 | E-GEOD-30067 | biostudies-arrayexpress

Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes

Project description:RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the discovery of a group of novel animally enriched RNAs, this study revealed a surprisingly low conservation of vegetal RNA localization between the two frog species. mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed.

2015-12-09 | E-GEOD-58420 | biostudies-arrayexpress

Deep sequencing of small RNAs in the Xenopus tropicalis gastrula

2011-06-18 | GSE30067 | GEO

Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues

Project description:Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues

2021-04-09 | GSE171687 | GEO

Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes

2015-12-09 | GSE58420 | GEO

A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development

Project description:To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted total RNA were harvested across six developmental stages and subjected to high throughput sequencing. The maternally loaded transcriptome is highly diverse and consists of both polyadenylated and deadenylated transcripts. Many maternal genes show peak expression in the oocyte and include genes which are known to be the key regulators of events like oocyte maturation and fertilization. Of all the transcripts that increase in abundance between an early blastula and larval stages, about 30% of the embryonic genes are induced by fourfold or more by the late blastula stage and another 35% by late gastrulation. Using a gene model validation and discovery pipeline, we identified novel transcripts, the majority of which show hallmarks of being long non-coding RNAs both in terms of their coding potential and gene structure. Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development

2013-11-12 | E-GEOD-43652 | biostudies-arrayexpress

Xenopus tropicalis

Project description:Xenopus tropicalis RNA-seq

| PRJNA79499 | ENA

Xenopus tropicalis

Project description:Xenopus tropicalis oocyte transcriptome

| PRJNA302214 | ENA

Xenopus tropicalis strain:Nigerian

Project description:Xenopus tropicalis

| PRJNA12348 | ENA