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Zymoseptoria tritici IPO323

ABSTRACT: WGS sequencing, assembly, and annotation

PROVIDER: PRJNA19047 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	ACPE01.dat.gz	Other
	ACPE01.fasta.gz	Fasta.gz
	ACPE01.master.dat	Other
	SRR4239870.fastq.gz	Fastqsanger.gz
	SRR4239880.fastq.gz	Fastqsanger.gz

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Improved genome annotation of the fungal wheat pathogen Zymoseptoria tritici IPO323 using Iso-Seq and RNA-Seq data

Project description:To reannotate the genome of Zymoseptoria tritici IPO323, RNA-Seq and Iso-Seq runs were performed on different growth media to provide new source of evidence for gene model predictors. New gene models were predicted and combined with existing annotation releases. Finally, selection of best gene models was done by congruence with evidence data like transcript assembled from RNA-Seq, Iso-Seq cDNA and fungal proteins from databases.

2023-07-04 | GSE218898 | GEO