Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Phytophthora pinifolia strain:CBS 122922

ABSTRACT: Phytophthora pinifolia strain:CBS 122922 Genome sequencing and assembly

PROVIDER: PRJNA190828 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR870490_1.fastq.gz	Fastqsanger.gz
	SRR870490_2.fastq.gz	Fastqsanger.gz
	SRR870493_1.fastq.gz	Fastqsanger.gz
	SRR870493_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Phytophthora fragariae strain:CBS 309.62

Project description:Phytophthora fragariae strain:CBS 309.62 Genome sequencing and assembly

| PRJNA243070 | ENA

Phytophthora cambivora strain:CBS 114087

Project description:Phytophthora cambivora strain:CBS 114087 Genome sequencing and assembly

| PRJNA190824 | ENA

Phytophthora rubi strain:CBS 109.892

Project description:Phytophthora rubi strain:CBS 109.892 Genome sequencing and assembly

| PRJNA244739 | ENA

Phytophthora lateralis strain:CBS 168.42

Project description:Phytophthora lateralis strain:CBS 168.42 Genome sequencing and assembly

| PRJNA190827 | ENA

Phytophthora cryptogea strain:CBS 418.71

Project description:Phytophthora cryptogea strain:CBS 418.71 Genome sequencing and assembly

| PRJNA190825 | ENA

Phytophthora kernoviae strain:CBS 122049

Project description:Phytophthora kernoviae strain:CBS 122049 Genome sequencing and assembly

| PRJNA190826 | ENA

ChIP-seq of phytophthora sojae P6497

Project description:Centromeres are chromosomal regions that serve as platforms for kinetochore assembly and spindle attachments, ensuring accurate chromosome segregation during cell division. Despite functional conservation, centromeric sequences are diverse and usually repetitive across species, making them challenging to assemble and identify. Here, we describe centromeres in the model oomycete Phytophthora sojae by combining long-read sequencing-based genome assembly and chromatin immunoprecipitation for the centromeric histone CENP-A followed by high-throughput sequencing (ChIP-seq). P. sojae centromeres cluster at a single focus in the nucleus at different life stages and during nuclear division. We report a highly contiguous genome assembly of the P. sojae reference strain, which enabled identification of 15 highly enriched CENP-A binding regions as putative centromeres. By focusing on 10 intact regions, we demonstrate that centromeres in P. sojae are regional, spanning 211 to 356 kb. Most of these regions are transposon-rich, poorly transcribed, and lack the euchromatin mark H3K4me2 but are embedded within regions with the heterochromatin marks H3K9me3 and H3K27me3.

2020-01-07 | GSE143137 | GEO

Phytophthora cinnamomi strain:CBS 144.22 | isolate:CBS 144.22

Project description:Phytophthora cinnamomi CBS 144.22 Transcriptome - Control

| PRJNA458021 | ENA

Phytophthora cinnamomi strain:CBS 144.22 | isolate:CBS 144.22

Project description:Phytophthora cinnamomi CBS 144.22 Transcriptome - Developmental

| PRJNA458022 | ENA

Phytophthora cinnamomi strain:ST402 | breed:Phytophthora

Project description:Phytophthora cinnamomi strain:ST402 | breed:Phytophthora Genome sequencing and assembly

| PRJNA832078 | ENA