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Transcriptional targets of Pou5f1 in Zebrafish (Danio Rerio)

ABSTRACT: Transcriptional targets of Pou5f1 in Zebrafish (Danio Rerio)

PROVIDER: PRJNA192827 | ENA |

REPOSITORIES: ENA

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Pou5f1 transcription targets in zebrafish

Project description:Pou5f1 transcription targets in zebrafish

| PRJNA118423 | ENA

Project description:In triplicate for each condition, 12 WT and acbd6 F0 crispant Danio rerio (zebrafish) embryos were incubated with 20 μM YnMyr for 24 h, either between 48-72 hpf or 96-120 hpf. After labelling, zebrafish were washed twice with fresh egg water, deyolked, flash frozen in liquid nitrogen and stored at -80°C until further analysis.

2024-06-16 | PXD043679 | Pride

Zebrafish Danio rerio

Project description:Zebrafish Danio rerio Raw sequence reads

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2024-06-16 | PXD043676 | Pride

Zebrafish (Danio rerio) catecholaminergic neuron RNA-seq based transcript profiles

Project description:This project aimed at identifying developmental stage specific transcript profiles for catecholaminergic neurons in embryos and early larvae of zebrafish (Danio rerio). Catecholaminergic neurons were labeled using transgenic zebrafish strains to drive expression of GFP. At stages 24, 36, 72 and 96 hrs post fertilization, embryos were dissociated and GFP expressing cells sorted by FACS. Isolated RNAs were processed using either polyA selection and libray generation or NanoCAGE. This is the first effort to determine stage specific mRNA profiles of catecholaminergic neurons in zebrafish.

2012-10-15 | GSE41373 | GEO

Zebrafish, LC-MS/MS - Profiling of Histidine Phosphoproteome in Danio rerio by TiO2 Enrichment

Project description:Histidine phosphorylation is a reversible post-translational modification that is known to regulate signal transduction in prokaryotes. In an effort to help elucidate the heretofore hidden vertebrate phosphoproteome, this report presents a global phosphorylation analysis of Danio rerio (zebrafish) larvae. Phosphopeptide enrichment was performed using a TiO2 affinity technique. A total of 68 unique phosphohistidine sites were detected on 63 proteins among 1076 unique phosphosites on 708 proteins. This report provides the first phosphohistidine dataset obtained from zebrafish.

2019-03-21 | PXD012735 | Pride

Differential hepatic gene expression in zebrafish (Danio rerio) exposed to the fungicide chlorothalonil reveals estrogenicity

Project description:Chlorothalonil (2,4,5,6-tetrachloroisophthalonitrile) is a broad spectrum fungicide used extensively in agricultural crops . The aim of this study is to analyse the effects of Chorothalonil on the gene expression profiles in zebrafish (Danio rerio), exposed to two concentrations of the fungicide in the water. Nominal concentrations were 1) Low 0.007mg/l (environmentally relevent) and 2) High 0.035mg/ml . A commercial third generation microarray for Danio rerio (Agielnt V3, 4x44k) was used to identify patterns of gene expression in male livers during a 96h toxicological assay.

2015-06-17 | GSE67600 | GEO

Danio rerio cultivar:zebrafish

Project description:Danio rerio cultivar:zebrafish Raw sequence reads

| PRJNA982694 | ENA

Transcriptional responses of the zebrafish (Danio rerio) brain to acute sodium selenite supplementation.

Project description:The possible benefits of selenium (Se) supplementation are currently under investigation for prevention of certain cancers and treatment of neurological disorders. Little is known concerning the response of the brain to increased dietary Se under conditions of Se sufficiency, despite the majority of Se supplementation trials occurring in healthy subjects considered Se sufficient. We evaluated the transcriptional response of the zebrafish (Danio rerio) brain to supplementation with nutritionally relevant levels of dietary Se (sodium selenite) during conditions of assumed Se sufficiency. We used a microarray approach to analyze the global gene expression response of the brain to dietary Se supplementation for 14 days. The experiment used Affymetrix microarrays to compare whole brain RNA from 8 adult zebrafish (Danio rerio) fed a diet with control selenium levels (1.4ppmSe) and 8 fed a diet supplemented with sodium selenite (5.6ppmSe) for 14 days, and with an equal sex ratio within each diet.

2013-02-26 | E-GEOD-44623 | biostudies-arrayexpress

Calsequestrins in skeletal and cardiac muscle from adult Danio rerio.

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2015-11-10 | PXD002455 | Pride

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