Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oxytricha trifallax strain:JRB310

ABSTRACT: Oxytricha trifallax Micronuclear Genome sequencing

PROVIDER: PRJNA194431 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ARYC01.dat.gz	Other
	ARYC01.fasta.gz	Fasta.gz
	ARYC01.master.dat	Other
	SRR1015451_1.fastq.gz	Fastqsanger.gz
	SRR1015451_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 50

Similar Datasets

Oxytricha trifallax

Project description:Genome sequencing of Oxytricha trifallax

| PRJNA12857 | ENA

Mating of the stichotrichous ciliate Oxytricha trifallax induces production of a class of 27nt small RNAs derived from the parental macronucleus

Project description:Here we report that soon after mating of Oxytricha trifallax, abundant 27nt small RNAs are produced that are not present prior to mating. We performed next generation sequencing of these 27nt RNAs from various times after mating. Using sequence comparisons between macronuclear and micronuclear versions of genes, we found that this 27nt RNA class derives from the parental macronucleus, not the developing macronucleus. These small RNAs are produced equally from both strands of macronuclear nanochromosomes, but in a highly non-uniform distribution along the length of the nanochromosome, and with a particular depletion in the 30 nt telomere-proximal positions. Unlike the Tetrahymena scanRNAs, the Oxytricha macronuclear-derived 27mers are not modified by 2'O-methylation at their 3' ends. Examination of small RNAs produced in Oxytricha trifallax during vegetative growth and at various timepoints during the mating process

2012-04-19 | E-GEOD-37390 | biostudies-arrayexpress

Oxytricha trifallax

Project description:Oxytricha trifallax overview

| PRJNA160115 | ENA

Oxytricha trifallax

Project description:Ciliate protist Oxytricha trifallax

| PRJNA12856 | ENA

Oxytricha trifallax

Project description:Oxytricha trifallax sRNA sequences

| PRJNA407474 | ENA

Oxytricha trifallax

Project description:Oxytricha trifallax developmental life cycle

| PRJNA665991 | ENA

Oxytricha trifallax strain:JRB310

Project description:Oxytricha trifallax Whole Genome Sequencing Project

| PRJNA74629 | ENA

Oxytricha trifallax

Project description:Long-read sequencing of the Oxytricha trifallax macronuclear genome

| PRJNA352762 | ENA

Mating of the stichotrichous ciliate Oxytricha trifallax induces production of a class of 27nt small RNAs derived from the parental macronucleus

2012-04-19 | GSE37390 | GEO

Cytosine methylation and hydroxymethylation mark DNA for elimination in Oxytricha trifallax.

Project description:We report the existence of both methylcytosine and hydroxymethylcytosine in the genomic DNA of the ciliate Oxytricha trifallax during its genome rearrangement process. These modifications are dynamically added, de novo, to sequences targeted for elimination and are not present after the rearrangement process (in vegetative cells). We performed methyl-DNA immunoprecipitation-sequencing (meDIP-seq) with antibodies against methylcytosine and hydroxymethylcytosine.

2012-09-26 | GSE41060 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data